LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele49g0357	ATGAGCGCGCCTCTCTCCAATGACCTTCGCTCCAAGTACAACGTGCGGTCCATGCCGGTGCGCAAGGATGATGAGGTTCAAGTTGTTCGTGGCACCTACAAAGGTCGTGAGGGAAAGGTGGTTCAGGTCTACCGTCGCAAATGGGTCATTCACATCGAGCGGATTACTCGTGAGAAGGTAAATGGTTCAACCGTGAATGTTGGGATTAACCCTTCGAAAGTTGTCATCACGAAGCTAAGGTTGGATAAGGACCGCAAGTCCTTGCTTGATCGCAAGGCCAAGGGACGTGCAACCGCCGACAAGGTCAAGGGCACCAAGTTTACTGCCGAGGACATTATGCAAAATGTGGATTAG	354	0.5141	MSAPLSNDLRSKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDRKAKGRATADKVKGTKFTAEDIMQNVD	117

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele49g0357	117	Pfam	Ribosomal proteins L26 eukaryotic, L24P archaeal	1	92	IPR005756	GO:0003735\|GO:0006412\|GO:0015934
	Lele49g0357	117	Pfam	KOW motif	22	53	IPR005824	-
	Lele49g0357	117	ProSitePatterns	Ribosomal protein L24 signature.	23	40	IPR005825	GO:0003735\|GO:0005840\|GO:0006412
	Lele49g0357	117	FunFam	60S ribosomal protein L26	1	115	-	-
	Lele49g0357	117	CDD	KOW_RPL26	23	76	IPR041988	GO:0003723
	Lele49g0357	117	TIGRFAM	rplX_A_E: ribosomal protein uL24	1	93	IPR005756	GO:0003735\|GO:0006412\|GO:0015934
	Lele49g0357	117	SMART	kow_9	19	46	IPR005824	-
	Lele49g0357	117	SUPERFAMILY	Translation proteins SH3-like domain	1	96	IPR008991	-
	Lele49g0357	117	Gene3D	-	1	115	IPR014722	-
	Lele49g0357	117	PANTHER	60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER	1	113	IPR005756	GO:0003735\|GO:0006412\|GO:0015934

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele49g0357	Lele-ChrLele49	2113907	2114260	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele49g0357	1	117	Cytoplasmic Ribosomal Protein Gene Family	AT3G49910	89.744	1.44e-75	218

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele49g0357	49	2113907	2114260	Lele49g0357	49	2113907	2114260	ECH
	Lele49g0357	49	2113907	2114260	Lele51g0371	51	2139628	2140068	hybridization
	Lele49g0357	49	2113907	2114260	Lele52g0385	52	2267845	2268285	hybridization