LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele49g0349	ATGATCAACCCCTCCACTGCCCAACCAAGAACCCCCCAAAAGACACCTCAACGTCGTTCTGCGGCCGAACTATACTGCGAGTTGATTGTCGATATGGGAGAACAGTCTGGGACTGCGGTGGTGAGAGAATTCGATGCCCATAGGGACCGAGAAAGAGTGGAAGCCATGGAAAAGATATGTGAGGTCGGACCCAGTGGGAAGCTCTCCCTGTTCACCGACCTCATGGGTGACCCGATTTGCAGGGTCCGCAACTCACCTTCTTTTCTCATGCTGGTAGCCGAGATGGGCCAAGAGATCGTGGGAATGATAAGGGGCTGCATCAAAACCGTTACATGCGGAAAGAAGCTATCCAGAAATGTGAAGAGCCCCTACTTGAATATCAACGACGCTGATAACTTCCAAGCAACTCCCAGATACGTCCCTGTATACACCAAAGTCGCCTACATTTTAGGCCTCCGCGTCTCGCCTTCTCACCGGAGAATGGGAATAGGGCTGAAGCTGGTGCACAGAATAGAGGAGTGGTTCAGAGATAATGGGGTTGAGTACTCGTATATAGCAACGGAAAACGACAATTTAGCATCCGTTAAGCTCTTCACCGACAAATGCGGATACTCCAGGTTCCGTACCCCGTCAATCCTTGTCAATCCCGTTTACGCTCACAGAGAGAAGGTCTCTCACAAGGTCACCATCATCCCGCTCAACTCCGACGACGCCGAATCCCTCTATCGTCGTCGCTTCGCCACTACCGAATTCTTTCCCCGCGACATTGATTCCATCCTGAAAAACAAACTCAGCCTCGGGACCTTCCTCGCCGTCCCAAGTGGGTCCTACCGCCCAGAGACATGGCCCGGGTTGGATCGCTTCCTGTCGGACCCACCAGAGTCCTGGGCAGTGCTCAGCGTCTGGAACTGCAAGGAAGTCTTCACGCTCGAAGTGCGGGGCGCGTCACGCATGAAGCGCACCCTCGCGAAAACGACCAGAATAGTGGATCGGGCCTTACCGTGGCTGAGGCTGCCGTCGATCCCAAACTTCTTCACACCGTTCGGACTGCACTTCCTGTATGGACTCGGAGGCGAAGGCCCAGAAGCGGTGAAGATGGTGAAGGCCTTGTGTGGGTTCGCACATAACCTGGGGAAGGAAAGTGGATGCCGGGTGGTGGCGACGGAGGTATCGAGCAGCGATCCCCTCAAGTTCGGGATACCACATTGGAAGATGTTGTCTTGCGATGAGGATTTATGGTGCATCAAGCGGCTCGGGGAAGACTACAGTGACGGCTCCGTGGGTGACTGGACCAAATCTCCGCCCGGATGGTCCATTTTTGTTGACCCCAGAGAGGAGTTTCTGAGAGAACTTGTGCTGAGGAAAGGGAAGCGCCCTGAGGAAAACGGCGTACAAGGACCTGATTTTGGAGAACAGTATATTGCAAAATGGGAATGTGGTGGGATCTGGAGAAAGCAAATATAA	1464	0.5369	MINPSTAQPRTPQKTPQRRSAAELYCELIVDMGEQSGTAVVREFDAHRDRERVEAMEKICEVGPSGKLSLFTDLMGDPICRVRNSPSFLMLVAEMGQEIVGMIRGCIKTVTCGKKLSRNVKSPYLNINDADNFQATPRYVPVYTKVAYILGLRVSPSHRRMGIGLKLVHRIEEWFRDNGVEYSYIATENDNLASVKLFTDKCGYSRFRTPSILVNPVYAHREKVSHKVTIIPLNSDDAESLYRRRFATTEFFPRDIDSILKNKLSLGTFLAVPSGSYRPETWPGLDRFLSDPPESWAVLSVWNCKEVFTLEVRGASRMKRTLAKTTRIVDRALPWLRLPSIPNFFTPFGLHFLYGLGGEGPEAVKMVKALCGFAHNLGKESGCRVVATEVSSSDPLKFGIPHWKMLSCDEDLWCIKRLGEDYSDGSVGDWTKSPPGWSIFVDPREEFLRELVLRKGKRPEENGVQGPDFGEQYIAKWECGGIWRKQI	487

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele49g0349	487	PANTHER	ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN	34	445	-	-
	Lele49g0349	487	FunFam	Probable N-acetyltransferase HLS1-like	48	211	-	-
	Lele49g0349	487	SUPERFAMILY	Acyl-CoA N-acyltransferases (Nat)	80	207	IPR016181	-
	Lele49g0349	487	MobiDBLite	consensus disorder prediction	1	18	-	-
	Lele49g0349	487	ProSiteProfiles	Gcn5-related N-acetyltransferase (GNAT) domain profile.	39	224	IPR000182	GO:0016747
	Lele49g0349	487	Gene3D	-	72	211	-	-
	Lele49g0349	487	Pfam	Acetyltransferase (GNAT) family	84	204	IPR000182	GO:0016747
	Lele49g0349	487	MobiDBLite	consensus disorder prediction	1	20	-	-
	Lele49g0349	487	CDD	NAT_SF	90	182	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele49g0349	Lele-ChrLele49	2061074	2063968	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	GNAT	Lele49g0349		Acetyltransf_1	4.7e-18	CL0257

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele49g0349	49	2061074	2063968	Lele53g0193	53	1606072	1607547	CCT
	Lele49g0349	49	2061074	2063968	Lele54g0196	54	1691667	1693077	CCT
	Lele49g0349	49	2061074	2063968	Lele55g1292	55	19399716	19401191	CCT
	Lele49g0349	49	2061074	2063968	Lele56g1241	56	15751797	15753274	CCT
	Lele53g0198	53	1658840	1662078	Lele49g0349	49	2061074	2063968	CCT
	Lele54g0202	54	1741008	1744207	Lele49g0349	49	2061074	2063968	CCT
	Lele55g1287	55	19342249	19345488	Lele49g0349	49	2061074	2063968	CCT
	Lele56g1236	56	15698061	15701215	Lele49g0349	49	2061074	2063968	CCT
	Lele49g0349	49	2061074	2063968	Lele49g0349	49	2061074	2063968	ECH
	Lele49g0349	49	2061074	2063968	Lele51g0362	51	2079677	2081713	hybridization
	Lele49g0349	49	2061074	2063968	Lele52g0374	52	2203841	2205497	hybridization