Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0339 ATGGAACTTTCTTCTTCCTTCATCCTTTCCCCAAAACCATCCCAGGGTTCTCATTACTCTTTCTCATCTTCACTTTCTTCATTTCGTTTTCAAACTATCATTCGAAACCCCGGAATCCAAAATCCTACCTCACAAAGCTTTCGTATTTTTGCTGTGGCCTTAGACCCGCCACAGGAACTTCCTAAAAATAGTCCCCAACGACTTCTGAAGGAGCTCGCTGAACGTAAGAAAGTAACCTCTCCAAAGAAAAAGGCACCGCCCAGGAAGTTCATTTTACGGCCTCCTCTTGATGACAATAAATTAGCTCAGAGGTTTCTCAATAGCCCTCAATTGTCCCTCAAATCGTTTCCTTTATTAAGTTCTTGCTTACCTTCTTCTCGGCTTAACAATGCTGATAAGACATGGATGGACGAGTACTTGCTCGAAGCGAAGCAAGCTCTGGGATACTCACTTGAGCCATCAGAAAACCTCGGGGATGACAATCCGGCAAAGCAATTCGATACTTTGTTATACTTGGCGTTTCAACATCCATCGTGTGAGAGAACAAAGGCAAGACACGTGAGATCCGGCCATACTAGGCTATTGTTTTTAGGGCAGTATGTTCTTGAGTTGGCGCTCGCAGAATATTTCTTACAGAGATATCCGAGGGAGTCACCGGGTCCAATGCGGGAGAGGGTATTCGGGTTAATTGGAAAGAGAAACTTGCCCAAGTGGATTAAAGCTGCTAGCTTGCAGAATTTGATCTTCCCATATGATGATATTGACAAGTTGGTGAGAAAGGAGAGGGAAGGACCCGTAAAGTTTGTATTTTGGGCTTTGTTTGGTGCAATCTATCTGTGTTTTGGTATGCCGGAAGTATATCGCGTTCTTTTTGAAGCCTTTGGAATGGATCCAGATGCTGAGGATTGCCAACCCAGATTACGTAGACAACTTGAAGATGTAGATTATGTATCTGCTGAATTTGAAGGCAGGCTGAGCTGGCAAGATGTGGCTACATACAAGCCTCCTGCAGATGCTCTGTTTGCACATCCAAGGCTCTTCAGAGCTTGTGTTCCTCCAGGAATGCATCGGTTCAGAGGAAATGTTTGGGATTATGATAGCAGACCACAGGTTATGCAAGCTCTGGGATATCCCTTAGAATTGACAGATGGCATTCAAGAAATTACTGAAGCTCGGAATATAGAACTTGGACTTGGGTTACAGCTTTGTTTCTTGCATCCATCGAAATACAAATTTGAGCATCCTCGATTTTGCTACGAGAGACTAGAATACCTTGGCCAAAAGATACAGGATTTGGTGATGGCTGAAAGATTGTTGATGAAGCATTTAGATGCTCCAGGCTTGTGGCTACAGGAGAGGCACCGTCGCCTTCTTATGAACAAGTACTGTGGAAGATATTTGAGGGACAAACGTCTCCACCGTTTCATCGTATATTCTGAACAGGTACAGGACCGTTATGAGCATAACCGGAGAATGAGGAACCCCGCCACGACAGCTGTTCAGCAAGCCATTCATGGTCTTGCATATGCTGTTTATGGGAAACGCGATGTAAGACGTCTAATGTTTGAAGAATTTGACTTTGAGCAGATTCAGCCTAAAGCTGTATGA 1608 0.4415 MELSSSFILSPKPSQGSHYSFSSSLSSFRFQTIIRNPGIQNPTSQSFRIFAVALDPPQELPKNSPQRLLKELAERKKVTSPKKKAPPRKFILRPPLDDNKLAQRFLNSPQLSLKSFPLLSSCLPSSRLNNADKTWMDEYLLEAKQALGYSLEPSENLGDDNPAKQFDTLLYLAFQHPSCERTKARHVRSGHTRLLFLGQYVLELALAEYFLQRYPRESPGPMRERVFGLIGKRNLPKWIKAASLQNLIFPYDDIDKLVRKEREGPVKFVFWALFGAIYLCFGMPEVYRVLFEAFGMDPDAEDCQPRLRRQLEDVDYVSAEFEGRLSWQDVATYKPPADALFAHPRLFRACVPPGMHRFRGNVWDYDSRPQVMQALGYPLELTDGIQEITEARNIELGLGLQLCFLHPSKYKFEHPRFCYERLEYLGQKIQDLVMAERLLMKHLDAPGLWLQERHRRLLMNKYCGRYLRDKRLHRFIVYSEQVQDRYEHNRRMRNPATTAVQQAIHGLAYAVYGKRDVRRLMFEEFDFEQIQPKAV 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0339 535 SUPERFAMILY RNase III domain-like 400 525 IPR036389 GO:0004525|GO:0006396
Lele49g0339 535 SMART riboneu5 400 535 IPR000999 GO:0004525|GO:0006396
Lele49g0339 535 SMART riboneu5 168 305 IPR000999 GO:0004525|GO:0006396
Lele49g0339 535 CDD RIBOc 400 525 IPR000999 GO:0004525|GO:0006396
Lele49g0339 535 CDD RIBOc 168 302 IPR000999 GO:0004525|GO:0006396
Lele49g0339 535 SUPERFAMILY RNase III domain-like 135 295 IPR036389 GO:0004525|GO:0006396
Lele49g0339 535 FunFam Ribonuclease III domain-containing protein RNC1, chloroplastic 392 528 - -
Lele49g0339 535 Gene3D Ribonuclease III domain 390 528 IPR036389 GO:0004525|GO:0006396
Lele49g0339 535 Gene3D Ribonuclease III domain 165 295 IPR036389 GO:0004525|GO:0006396
Lele49g0339 535 PANTHER RIBONUCLEASE III 86 335 IPR011907 GO:0003723|GO:0004525|GO:0006364
Lele49g0339 535 FunFam Ribonuclease III domain-containing protein RNC1, chloroplastic 165 296 - -
Lele49g0339 535 ProSiteProfiles Ribonuclease III family domain profile. 140 282 IPR000999 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0339 Lele-ChrLele49 1991214 1994321 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0339 49 1991214 1994321 Lele49g0339 49 1991214 1994321 ECH
Lele49g0339 49 1991214 1994321 Lele51g0352 51 2009824 2012909 hybridization
Lele49g0339 49 1991214 1994321 Lele52g0363 52 2126312 2134617 hybridization