Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0326 ATGGGGTGGGAATCAACTGAGCGAATCTTTACCTTCTCCCTAATTCTATGCCTTGCGCAGTTCAGCCCCTGGATTGTGGTTGCTGTCTCCGGCAATCCTAGCCACATTTTGCACCTCAGGAAGCTCCACGAAGGTGCTCGCCCTGCTATGATATTGCCGCTGTATCTCTCTGTTTCCAATTCTTCCATTTCCGCCTCCGATTACCGTCGCCAACTCCAGAGATCCGAGGCCCAACACCACCCCAACGCTCACATGGGGCTCCATGATGATCTTCTCCTTAACGGGTACTATACTACGCGGCTTTGGATCGGAACTCCTCCGCAGATGTTTGCTCTTATTGTTGATACGGGAAGTACTGTGACGTATGTCCCATGCTCTACCTGCGAACAGTGTGGCACGCACCAGGACCCGAGGTTCCAGCCAGAATTGTCAAACACCTATAAACCTGTCAAATGTTCATTGGACTGCAACTGCGACAGTGACAGAAATCAGTGCACATATGAGAGACAGTATGCTGAAATGAGTACTAGCAGTGGTGTCCTTGGTAATGATGTCATATCCTTTGGAAATCAAAGTGAGCTTGACCCTCAACATGCTGTTTTTGGTTGTGAAAATCTTGAGACTGGTGATCTTTATAGTCAGCATGCTGATGGCATCATGGGTTTGGGCCGTGGAGATCTCAGCATCGTGGATCAACTCGTTGAAAAAAATGCAATAAGTGATTCTTTTTCACTATGCTATGGTGGAATGGATTTTGGTGGGGGTGCTATGGTTCTTGGTGGAATATTCCCCCCATCAGACATGGTCTTTGCATATTCAGATCCTGTGCGCAGTCCATACTACAATGTCGATTTGAAGGAAATACACGTTGCTGGGAAGAAGCTATCCTTAAACCCAAAGGTTTTTGATGGAAAACATGGAACTGTGTTGGATAGTGGTACAACATATGCGTACCTACCTGAAGAAGCGTTCCTTGCATTTAAAGATGCTATTAAGAAGGAACTTCAATCTCTCAAGCAAATACGTGGTCCAGATCCAAATTATAATGATATATGCTTTTCCGGTGCCAAAATTTCTGTTTCACAACTCTCTGAAAGCTTTCCAACAGTTGACATTGTATTTGGAAATGGTCACGAGCTGTCTCTGTCACCTGAAAACTACTTATTCAGGCATTCAAAAGTGCGAGGTGCATATTGTCTTGGGATTTTCCAAAATGGAAAGGATCCAACTACTCTTCTAGGAGGTATTGTTGTTCGAAACACTCTTGTAATGTATGATCGAGAGAATTCAAGGATTGGTTTCTGGAAGACTAATTGTTCTGAGTTATGGGAAAGGCTACAGTTATCTGCTTCCCCGCCGCCAGAGTCTTTTGAAGGAGCAAATTCTATTGAAGCTTTTGCACCTTCAGTTGCTCCATCTGCATTACAGCATGATTTACATCCAGGGGGACTCCAAATTGCACAAATAACATTTGAAATTTCATTTAACATCAGCTACTCAGACATGAAAGATCAGATTGCAGACCTGGCTGGACTCATGGCTCACCAGTTAGATGTTAACACCTCACAGGTTCACTTATTGAATTGTTCTTCTCTCAGAAATGGTTCCCTCTCTAGATGGGCCATAACACCAGATGCATCTTCTGATTTCATATCTAACTCAACTGCGATGAGTATAATTTTGCGGCTTGCTGAAAAGCGCATGCAACTTCCTAGCACCTTTGGAAGTTATAAGTTGGTTGGTTGGAATGTCGAGCCTCCATCAAAACGGACTTGGTGGCAGCAATATGGTTTGGTGGCGACCTTGGCTTTTTTAGTTGCATTGCTTCTTGGATTATCAGCTACTGGAATATTCTTATTTTTGAAAAATAGACAGCAGCAAGTCGTGCACTCATACAAGCCTGTAGGCGTGTCCGCTCCAGAACAGGAACTTCAACCGTTGTGA 1944 0.4419 MGWESTERIFTFSLILCLAQFSPWIVVAVSGNPSHILHLRKLHEGARPAMILPLYLSVSNSSISASDYRRQLQRSEAQHHPNAHMGLHDDLLLNGYYTTRLWIGTPPQMFALIVDTGSTVTYVPCSTCEQCGTHQDPRFQPELSNTYKPVKCSLDCNCDSDRNQCTYERQYAEMSTSSGVLGNDVISFGNQSELDPQHAVFGCENLETGDLYSQHADGIMGLGRGDLSIVDQLVEKNAISDSFSLCYGGMDFGGGAMVLGGIFPPSDMVFAYSDPVRSPYYNVDLKEIHVAGKKLSLNPKVFDGKHGTVLDSGTTYAYLPEEAFLAFKDAIKKELQSLKQIRGPDPNYNDICFSGAKISVSQLSESFPTVDIVFGNGHELSLSPENYLFRHSKVRGAYCLGIFQNGKDPTTLLGGIVVRNTLVMYDRENSRIGFWKTNCSELWERLQLSASPPPESFEGANSIEAFAPSVAPSALQHDLHPGGLQIAQITFEISFNISYSDMKDQIADLAGLMAHQLDVNTSQVHLLNCSSLRNGSLSRWAITPDASSDFISNSTAMSIILRLAEKRMQLPSTFGSYKLVGWNVEPPSKRTWWQQYGLVATLAFLVALLLGLSATGIFLFLKNRQQQVVHSYKPVGVSAPEQELQPL 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0326 647 CDD pepsin_A_like_plant 96 439 IPR034161 -
Lele49g0326 647 FunFam Aspartyl protease family protein 81 260 - -
Lele49g0326 647 Pfam Xylanase inhibitor N-terminal 97 261 IPR032861 -
Lele49g0326 647 Gene3D Acid Proteases 83 260 IPR021109 -
Lele49g0326 647 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 112 123 IPR001969 GO:0004190|GO:0006508
Lele49g0326 647 PRINTS Pepsin (A1) aspartic protease family signature 308 319 IPR001461 GO:0004190|GO:0006508
Lele49g0326 647 PRINTS Pepsin (A1) aspartic protease family signature 411 426 IPR001461 GO:0004190|GO:0006508
Lele49g0326 647 PRINTS Pepsin (A1) aspartic protease family signature 103 123 IPR001461 GO:0004190|GO:0006508
Lele49g0326 647 FunFam Eukaryotic aspartyl protease family protein 268 443 - -
Lele49g0326 647 SUPERFAMILY Acid proteases 93 444 IPR021109 -
Lele49g0326 647 PANTHER ASPARTYL PROTEASES 34 433 IPR001461 GO:0004190|GO:0006508
Lele49g0326 647 Pfam Xylanase inhibitor C-terminal 281 434 IPR032799 -
Lele49g0326 647 Gene3D Acid Proteases 268 443 IPR021109 -
Lele49g0326 647 ProSiteProfiles Peptidase family A1 domain profile. 97 435 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0326 Lele-ChrLele49 1925146 1929974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0326 71 442 Miscellaneous Gene Families AT1G77480 29.665 1.57e-32 129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0174 53 1457521 1458461 Lele49g0326 49 1925146 1929974 CCT
Lele55g1310 55 19540104 19541044 Lele49g0326 49 1925146 1929974 CCT
Lele56g1261 56 15910740 15912010 Lele49g0326 49 1925146 1929974 CCT
Lele49g0326 49 1925146 1929974 Lele49g0326 49 1925146 1929974 ECH
Lele49g0326 49 1925146 1929974 Lele51g0339 51 1940149 1945057 hybridization
Lele49g0326 49 1925146 1929974 Lele52g0350 52 2063062 2067736 hybridization