Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0325 ATGCCTCGCCAAGATCACGAGCATGAACAACCACTGTTAGTGGACTCTGACAAACAAACTACCGAAGCCGCTTACGATTCCTCCGAAAAAGTCGTGGTCGTTGGCATCGACGAGTCCCACCCTGACTACGACGGCTGTGATCGCGCCCCGCCGTTTTCATGGAAGAAGCTTTGGCTCTTCACTGGTCCTGGTTTTCTCATGAGCATTGCCTTTCTCGATCCTGGAAATCTTGAGGGAGATCTTCAGGCTGGCGCAATTGCTGGCTACTCCCTCTTATGGCTTCTCATGTGGGCTACAGTTATGGGGCTTCTGGTTCAGCTTTTGGCGGCACGGCTTGGAGTGGTGACTGGGAAGCATCTGGCTGAACTCTGCAGGGAGGAGTATCCAACTTGGGCGAGGATGGTACTGTGGGTTATGGCGGAGTTGGCTCTGATTGGGTCTGACATTCAAGAGGTTATTGGTAGCGCTATTGCTATCAGAATTCTAAGTAACGGGATTGTGCCTCTTTGGGCGGGGGTCATCATCACAGCTTGTGATTGTTTTATTTTCCTATTTCTTGAGAACTACGGTGTGAGGAAATTGGAAGCATTTTTTGCTGTTCTCATTGGTGTAATGGCCATCTCATTTGCGTGGATGTTTGGTGAAACAAAGCCTAGCGGCAAAGATCTTCTTATTGGTATTTTGGTTCCGAAACTTAGCTCCAGAACAATACAGAAGGCTGTTGGAGTAGTGGGTTGCATTATTATGCCTCACAACGTATTCTTGCACTCTGCACTTGTTCAGTCAAGACAGGTTGAGCAGAGCAAGAAAGGCCGAGTTCAGGAAGCACTTAATTATTATTCTATAGAGTCAACCGCTGCCCTTTTTGTCTCCTTTATCATTAATGTATTTGTCACGACTGTGTTTGCAAAGGGTTTTTATGGTACTGACCTTGCAGATAGTGTTGGTCTTGTGAATGCTGGGCAGTATCTTGAAGAAAAATATGGAGGTGGACTTCTGCCAATCTTATATATATGGGGTATTGGGTTATTAGCAGCGGGTCAAAGTAGCACTATTACTGGGACTTATGCTGGACAGTTTATAATGGGGGGCTTTCTTAATTTAAGGTTGAAAAAATGGATGAGGTCGTTAATTACACGAAGTTGTGCTATCATCCCAACCGTGACAATTGCTCTTGTCTTTGAAACATCAGAGGACTCGTTAGATGTTCTAAATGAATGGCTTAATGTTCTCCAGTCAATTCAAATCCCCTTTGCACTTATTCCCTTGCTTTGTCTGGTGTCCAAGGAGCACATAATGGGCGCTTTCAGAATTGGCCCTGCCCTCAAGACTATTGCATGGTTCGTGGCTGCTCTGGTGATAGCGATCAATGGGTATCTTATGCTGGAATTCTTCAACTCTGATGTCAATGGAGTAATATTTGGTGCTGTCGTGTGCGCTTTTGTGGCTGCATATGTTGCATTCATACTTTACCTTGTTTCAAGGGCCATCACCTTTTCACCAAGGCAAAGCTCAACACAATCAAAGATAATTGCTAACTCACAGAATTAA 1551 0.4513 MPRQDHEHEQPLLVDSDKQTTEAAYDSSEKVVVVGIDESHPDYDGCDRAPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATVMGLLVQLLAARLGVVTGKHLAELCREEYPTWARMVLWVMAELALIGSDIQEVIGSAIAIRILSNGIVPLWAGVIITACDCFIFLFLENYGVRKLEAFFAVLIGVMAISFAWMFGETKPSGKDLLIGILVPKLSSRTIQKAVGVVGCIIMPHNVFLHSALVQSRQVEQSKKGRVQEALNYYSIESTAALFVSFIINVFVTTVFAKGFYGTDLADSVGLVNAGQYLEEKYGGGLLPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRSLITRSCAIIPTVTIALVFETSEDSLDVLNEWLNVLQSIQIPFALIPLLCLVSKEHIMGAFRIGPALKTIAWFVAALVIAINGYLMLEFFNSDVNGVIFGAVVCAFVAAYVAFILYLVSRAITFSPRQSSTQSKIIANSQN 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0325 516 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 49 500 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele49g0325 516 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 55 433 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele49g0325 516 Pfam Natural resistance-associated macrophage protein 78 439 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele49g0325 516 PRINTS Natural resistance-associated macrophage protein signature 191 212 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele49g0325 516 PRINTS Natural resistance-associated macrophage protein signature 409 428 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele49g0325 516 PRINTS Natural resistance-associated macrophage protein signature 240 263 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele49g0325 516 PRINTS Natural resistance-associated macrophage protein signature 375 392 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele49g0325 516 PRINTS Natural resistance-associated macrophage protein signature 136 162 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele49g0325 516 PRINTS Natural resistance-associated macrophage protein signature 166 185 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele49g0325 516 PRINTS Natural resistance-associated macrophage protein signature 347 366 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele49g0325 516 Hamap Divalent metal cation transporter MntH [mntH]. 41 465 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0325 Lele-ChrLele49 1921308 1924029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0325 1 509 Inorganic Solute Cotransporters AT2G23150 75.882 0.0 797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0325 49 1921308 1924029 Lele53g0166 53 1385059 1387746 CCT
Lele49g0325 49 1921308 1924029 Lele54g0167 54 1439657 1443733 CCT
Lele49g0325 49 1921308 1924029 Lele55g1317 55 19612602 19615264 CCT
Lele49g0325 49 1921308 1924029 Lele56g1267 56 15972295 15978901 CCT
Lele53g0170 53 1411892 1416402 Lele49g0325 49 1921308 1924029 CCT
Lele54g0171 54 1462802 1464861 Lele49g0325 49 1921308 1924029 CCT
Lele55g1313 55 19585144 19586200 Lele49g0325 49 1921308 1924029 CCT
Lele56g1264 56 15953287 15955343 Lele49g0325 49 1921308 1924029 CCT
Lele49g0325 49 1921308 1924029 Lele49g0325 49 1921308 1924029 ECH
Lele49g0325 49 1921308 1924029 Lele51g0338 51 1936339 1939062 hybridization