Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0309 ATGTTTTCGGCCAACGTTGAAAAACTGGAGCAGGTTAATGGCAATGGTGAATGGGTGGAAGAATTTAAGTTCAGCCTTCAAGATGATTGATCTGAGATTCTCGCCTGGATGAACTCCTCACTCCAATTAAGTCTCTCCAAAGTCGAAGAGGCTTGTTCCGGTGCTGTACACTGCCAGCTTATGGATGCGGTCCATCCTGGGATTGTGCCGATGCACAAGGTCAATTTTGATGCCAAGAGCGAGTACGAGATGATTCAGAACTACAAAGTCCTTCAAGACGTATTTAATAAACTCAAAATCACCAAGCACATCGAGGTCAGCAAGCTTGTGAAAGGAAGACCGCTGGATAATTTGGAGTTCATGCAGTGGATGAAACGATATTGTGACTCTGTCAACTCGGGACTTCTGAACTCTAGATACATGTCTCTGCCAACCTTTCTTGGTTTGAAACTTGCCAATCCTTTAGTTGATGTCCTTCAAGATGAAAAAAAGAAGACAAAAGCAAAGCTTTTACCCTCTGCTAAGGTTTCTACCACCGCGAAGTCTCACTCTTCTCATAATGGACGAAGAAATGACGTATCTTCTGGAAATAACGCCAATCAAGCAGCGAGAGGCGCAAAACCTCCAAGCAGCGGCCCTTCATACGATGAACAGATCACGGAGTTAAAATTGTCCATTGATGGCCTTGAAAAAGAGAGGGATTTCTACTTTGCAAAACTGAGGGATATTGAGATACTCTGCCAAAGTCCTGGACTAGAACACTTACAGGTTGTCGCAGCAATTCAGAAGATATTATATGCCACAGATGATGATGCAACGGTTGTGGTGGAAGCTCAAGCCATGGTTTCAGTTCAGCAGAAGGAAGGTGAGAGATTGAGCCCCATCACAGAGGTTTTGGAGGAGAAAGGCAGTACAGAAAATCTGAAGAGAAAGATCATTGTGAATCCAGACTATGATGCGACTGGCATCATAACATTGTCGCCGAGGCAAAGGCTTTCTGATGTTTCAGATGTTCTTTGTAGCGGGTCACCTCTCATGACTTGTTAA 1047 0.4413 MFSANVEKLEQVNGNGEWVEEFKFSLQDDXSEILAWMNSSLQLSLSKVEEACSGAVHCQLMDAVHPGIVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVSKLVKGRPLDNLEFMQWMKRYCDSVNSGLLNSRYMSLPTFLGLKLANPLVDVLQDEKKKTKAKLLPSAKVSTTAKSHSSHNGRRNDVSSGNNANQAARGAKPPSSGPSYDEQITELKLSIDGLEKERDFYFAKLRDIEILCQSPGLEHLQVVAAIQKILYATDDDATVVVEAQAMVSVQQKEGERLSPITEVLEEKGSTENLKRKIIVNPDYDATGIITLSPRQRLSDVSDVLCSGSPLMTC 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0309 348 MobiDBLite consensus disorder prediction 172 217 - -
Lele49g0309 348 Gene3D - 214 291 - -
Lele49g0309 348 FunFam Microtubule-associated protein RP/EB family member 1C 214 292 - -
Lele49g0309 348 ProSiteProfiles EB1-C terminal (EB1-C) domain profile. 204 274 IPR004953 GO:0008017
Lele49g0309 348 FunFam RP/EB family microtubule-associated protein 23 143 - -
Lele49g0309 348 Pfam EB1-like C-terminal motif 229 267 IPR004953 GO:0008017
Lele49g0309 348 Pfam Calponin homology (CH) domain 31 123 IPR001715 GO:0005515
Lele49g0309 348 MobiDBLite consensus disorder prediction 170 217 - -
Lele49g0309 348 PANTHER MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER 31 280 IPR027328 GO:0008017
Lele49g0309 348 ProSiteProfiles Calponin homology (CH) domain profile. 27 129 IPR001715 GO:0005515
Lele49g0309 348 SUPERFAMILY EB1 dimerisation domain-like 215 272 IPR036133 GO:0008017
Lele49g0309 348 Gene3D - 23 142 IPR036872 -
Lele49g0309 348 SUPERFAMILY Calponin-homology domain, CH-domain 30 131 IPR036872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0309 Lele-ChrLele49 1821644 1824681 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0309 49 1821644 1824681 Lele49g0309 49 1821644 1824681 ECH
Lele49g0309 49 1821644 1824681 Lele51g0321 51 1823010 1827479 hybridization
Lele49g0309 49 1821644 1824681 Lele52g0335 52 1968640 1977946 hybridization