Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0303 ATGGATTCGGGTTGCTTTATCATTACCATTTCATTTTCTCTCTGCCTCTTTCATGGTTCTGTGAGTATGGCCGTGGAGCTCATGATGGGTTACAGGAACGATAGCTTCGCGGCCAAAACGGATGACAATGTTGTTCAGGAAGCTGCGTCTGGCCTGGAGAGCCTCGAGAAGCTCATCAGGTTGCTTTCTCAGAGCCAGCAGCAATTCCAGTCTTCTTCTTCTTCCACTTCAAAGTCTTCCGTGGAAATCGAGAGGGACTGTAAAGCCGTCGCAGACGTCGCCGTTTCCAAGTTCAAGAAGGTGATCTCTCTTCTGGGTCGAACCAGAACCGGTCACGCTCGATTTAGAAGAGCCCCTCTGCCGCCGCCACCTCCTCCTCCTCCTACCGTTAATCAAAACCCCGACCCGCAACCTTCGGAACCCAAAGTTTATTATGCGACGCCGTTGCAGCAGATCCCACCGGCCCTTATTCAACACCAATATCTAGCCGAACAACATCCCCTGGTCCCCAAAAGTGGGGTGATCGAGAGGAAGGACTCGTTCAAGACCATTAATTTCTCGTATTCCTCTGCCGCGACGTCGTTTATGTCATCTCTTACTGGCGATACTGATACTAAACAACCATCCTCGTCTTCGCCGGCGACCGCCTTTCAGATCACAAATCTGTCTCAGGTATCCTCAGCGGGGAAGCCTCCTCTTTCTTCTTCTTCGCTGAAGAGAAAGTGTAGCTCCGAGAACTTGGGTTCCGGCAAGTGCGGCAGTTCCTCTAGTCGTTGCCATTGTTCTAAAAAGAGAAAAATGAGGTTGAAGAGAGTAGTGAGGGTGCCCGCAATAAGCTTGAAGATGGCTGACATTCCACCTGATGATTATTCGTGGAGGAAGTACGGACAGAAGCCCATTAAAGGATCACCTCATCCTAGAGGATACTACAAGTGCAGTAGCTTAAGAGGTTGTCCAGCACGCAAGCACGTAGAGCGAGCTCTGGACGATCCATCGATGTTAGTAGTCACTTATGAAGGCGATCATAATCACTCGCTCTCTGCGACCGATTCAACGAATCTCATACTGGAATCCTCTTAG 1080 0.5 MDSGCFIITISFSLCLFHGSVSMAVELMMGYRNDSFAAKTDDNVVQEAASGLESLEKLIRLLSQSQQQFQSSSSSTSKSSVEIERDCKAVADVAVSKFKKVISLLGRTRTGHARFRRAPLPPPPPPPPTVNQNPDPQPSEPKVYYATPLQQIPPALIQHQYLAEQHPLVPKSGVIERKDSFKTINFSYSSAATSFMSSLTGDTDTKQPSSSSPATAFQITNLSQVSSAGKPPLSSSSLKRKCSSENLGSGKCGSSSSRCHCSKKRKMRLKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSLRGCPARKHVERALDDPSMLVVTYEGDHNHSLSATDSTNLILESS 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0303 359 SUPERFAMILY WRKY DNA-binding domain 283 346 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele49g0303 359 Pfam WRKY DNA -binding domain 288 344 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele49g0303 359 MobiDBLite consensus disorder prediction 222 255 - -
Lele49g0303 359 ProSiteProfiles WRKY domain profile. 281 347 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele49g0303 359 SMART WRKY_cls 286 346 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele49g0303 359 MobiDBLite consensus disorder prediction 112 143 - -
Lele49g0303 359 FunFam WRKY transcription factor 65 270 347 - -
Lele49g0303 359 Pfam Plant zinc cluster domain 239 284 IPR018872 -
Lele49g0303 359 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 44 351 IPR044810 GO:0003700
Lele49g0303 359 MobiDBLite consensus disorder prediction 117 135 - -
Lele49g0303 359 Gene3D WRKY domain 275 347 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0303 Lele-ChrLele49 1784960 1786803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0303 41 347 WRKY Transcription Factor Family AT2G24570 45.846 9.28e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lele49g0303 WRKY 9.1e-26 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0303 49 1784960 1786803 Lele49g0303 49 1784960 1786803 ECH
Lele49g0303 49 1784960 1786803 Lele51g0312 51 1785612 1786993 hybridization
Lele49g0303 49 1784960 1786803 Lele52g0328 52 1932011 1933361 hybridization