Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0295 ATGGACGACATGGCTGCCTACTACACACAATCCCAACCCTCGACTCATCCTACTTTTCCATATTATCAACATCCTCATCCGTCGGCGCTTGCAGGGGTGCCACCACCACCTGGTGCGGCGCCTCCCCAACACCTTCCTTCGCAGTATGGGTCCTACCAACAACCCTTGTTTGCATCTTGCGGACCTCCTAATCCTCTTCAGTATTCCGCCGACGAGGTTCGGACACTCTTCGTCGCCGGCCTTCCCGAGGATGTGAAGCCTCGCGAAATCTACAATTTGTTTCGAGAGTTTCCCGGTTACGAGTCATCACATCTTCGGAGCCCAACTGACTCGTCGCAGGCTTTTGCTTTTGCTGTATTCGATAATCAGCAGTCTGCACTCATGGCAATGCATGCATTAAATGGGATGGTCTTTGACCTTGAAGAGGGGTCAACTCTATATATAGATTTAGCAAAATCCAACTCTAGGTCTAAGCGCACAAGAATAGATGATGAAATAGTTGGCTCAGATAAGAAGGCTAGAGGATCTTCTTTTCCAAGGGCAACTCCTGATTCCGGTGTTGGCAGCATACACATGCCTGGAATGGGTAATCCTGCTTACAACACAAACACGTATGGTTATCCATCTGCACAAAGCCAATGGTATGCTGATGGTAAAGCTTTTAATGACAGTGCAGCAGCAAATTTGAATAACTCCCCTCGCATTCCACAAAATGTGACCCCATGTCCAACTTTATTTGTGGCTAACCTGGGGCCATCTTGTACCGAACAAGAGCTAATGCAAGTATTTTCCAGATGTCCTGGATTTTTGAAACTGAAGATGCAGAGCACATATGGAGCTCCAGTTGCATTTGTTGATTTTCAGGATGTTGCCAGTTCAACTGGAGCTCTAAACAGTCTACAAGGCGCCGTTCTTTACTCCTCAGCGGCCGGCGAGGGAATGCGGTTAGCATATGCAAAATCCCGGATGGGTATGCGGAAGAAGCCAAAGTAA 993 0.4794 MDDMAAYYTQSQPSTHPTFPYYQHPHPSALAGVPPPPGAAPPQHLPSQYGSYQQPLFASCGPPNPLQYSADEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSPTDSSQAFAFAVFDNQQSALMAMHALNGMVFDLEEGSTLYIDLAKSNSRSKRTRIDDEIVGSDKKARGSSFPRATPDSGVGSIHMPGMGNPAYNTNTYGYPSAQSQWYADGKAFNDSAAANLNNSPRIPQNVTPCPTLFVANLGPSCTEQELMQVFSRCPGFLKLKMQSTYGAPVAFVDFQDVASSTGALNSLQGAVLYSSAAGEGMRLAYAKSRMGMRKKPK 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0295 330 FunFam RNA-binding protein with multiple splicing 235 326 - -
Lele49g0295 330 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 76 139 IPR000504 GO:0003723
Lele49g0295 330 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 307 IPR000504 GO:0003723
Lele49g0295 330 SUPERFAMILY RNA-binding domain, RBD 73 306 IPR035979 GO:0003676
Lele49g0295 330 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 321 IPR000504 GO:0003723
Lele49g0295 330 MobiDBLite consensus disorder prediction 29 43 - -
Lele49g0295 330 CDD RRM_RBPMS_like 74 149 - -
Lele49g0295 330 FunFam RNA-binding protein with multiple splicing 2 71 161 - -
Lele49g0295 330 MobiDBLite consensus disorder prediction 169 189 - -
Lele49g0295 330 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 213 321 - -
Lele49g0295 330 SMART rrm1_1 75 149 IPR000504 GO:0003723
Lele49g0295 330 SMART rrm1_1 244 313 IPR000504 GO:0003723
Lele49g0295 330 Gene3D - 70 163 IPR012677 -
Lele49g0295 330 MobiDBLite consensus disorder prediction 1 43 - -
Lele49g0295 330 Gene3D - 236 329 IPR012677 -
Lele49g0295 330 MobiDBLite consensus disorder prediction 7 21 - -
Lele49g0295 330 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 74 153 IPR000504 GO:0003723
Lele49g0295 330 CDD RRM_scw1_like 241 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0295 Lele-ChrLele49 1749149 1753125 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0295 49 1749149 1753125 Lele49g0295 49 1749149 1753125 ECH
Lele49g0295 49 1749149 1753125 Lele51g0304 51 1738087 1746136 hybridization
Lele49g0295 49 1749149 1753125 Lele52g0319 52 1886069 1890511 hybridization