Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0294 ATGAAGATTCTCCCTCTCTCTCTCCCTTTTGATCAAACTCGCCGAGAGAGAGCGACGGAAGGTGAAGCGGCGGAAGGTGGAGTGAGAGATAGAGAGATGCCGGCCAGGAAAAGAGGGGCCGTTGAGCTTGAAGGAGAGAAAAGATACAAAGGGATTAGGATGAGGAAGTGGGGCAAGTGGGTCGCCGAGATTCGAGAGCCTAATAAACGATCTAGGATTTGGCTCGGTTCCTACTCCACTCCCGTCGCGGCCGCGCGGGCTTACGACACCGCCGTTTTCTATCTCAGGGGACCGTCAGGCCGCCTTAATTTCCCCGACCTTTTAGAAGGAGGTGGCGTTGGCGGGTGCGACATGTCGGCGGCTTCGATTAGGAAGAAAGCGACAGAGGTTGGCGCCAGAGTCGATGCTCTTCAGGCCGCTCTCCACCATCACCACCATGCCTCGGTGGCGCCTGAGCTCATGTCACGCAGCGCGGGCGCCGGAGCAGGGTCCGGGGAGTTTTTGGGGCGGGTTGACCTTAACAAGATACCAGAACCCGAGAATTCGGACAGCGACTGCGAGTGA 564 0.5798 MKILPLSLPFDQTRRERATEGEAAEGGVRDREMPARKRGAVELEGEKRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSGRLNFPDLLEGGGVGGCDMSAASIRKKATEVGARVDALQAALHHHHHASVAPELMSRSAGAGAGSGEFLGRVDLNKIPEPENSDSDCE 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0294 187 MobiDBLite consensus disorder prediction 14 34 - -
Lele49g0294 187 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Lele49g0294 187 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Lele49g0294 187 CDD AP2 47 107 IPR001471 GO:0003700|GO:0006355
Lele49g0294 187 Pfam AP2 domain 48 97 IPR001471 GO:0003700|GO:0006355
Lele49g0294 187 MobiDBLite consensus disorder prediction 167 187 - -
Lele49g0294 187 Gene3D AP2/ERF domain 47 106 IPR036955 GO:0003700|GO:0006355
Lele49g0294 187 FunFam Ethylene-responsive transcription factor 2 47 106 - -
Lele49g0294 187 SUPERFAMILY DNA-binding domain 48 106 IPR016177 GO:0003677
Lele49g0294 187 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Lele49g0294 187 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Lele49g0294 187 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 39 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0294 Lele-ChrLele49 1744225 1744788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0294 26 187 AP2-EREBP Transcription Factor Family AT5G67190 55.135 2.47e-58 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele49g0294 AP2 1.1e-11 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0294 49 1744225 1744788 Lele53g0143 53 1168762 1169217 CCT
Lele49g0294 49 1744225 1744788 Lele54g0143 54 1233061 1233516 CCT
Lele49g0294 49 1744225 1744788 Lele55g1345 55 19862591 19863046 CCT
Lele49g0294 49 1744225 1744788 Lele56g1292 56 16170211 16170672 CCT
Lele49g0294 49 1744225 1744788 Lele49g0294 49 1744225 1744788 ECH
Lele49g0294 49 1744225 1744788 Lele52g0318 52 1881378 1882013 hybridization