Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0284 ATGGGAGATATGTATCACTACGGTAATACTGAGAATCATAATTTCCCTGCGTCTTCAACCTCATCTTCACCTCAAGACGAAATCTCGCTTTTTCTGCGTCAGATTCTCCTTCGTTCATCCTCCTCGTCAGCATCATCGTCGCTGCTCGTGACCCACACGGCTAAAAACGCCCACACCTCCATGTCTGGACTCCGCAGTTCCCACGCTACGCTGGAGAATAATGCTCACCTTTCCCACCGATCATCACTTTTCCAAGATGGGATCTCCGTTGCTGATTCCTCCATCGGAGTAGGCGCTCCAAACGATGCTTTTCTTTCCTCTTCGGAGACTTATACGTTGGCCAATAAGAAGGATAGTTCTGCTGCAAACGTGCCTTCGTCATCTTTCGGAGTAAGTGAGAACGAGTTCGATGAGTATGATTGCGAGAGTGAGGAGGGGATCGAAGCATTGGTGGAACAGCAGCCGGTAAAGTCAGTTCCTCCGAGAAGTTCATCGAAGAGAAGCAGAGCTGCGGAAGTTCATAATTTGTCTGAAAAGAGAAGGAGAAGCAGGATCAACGAAAAAATGAAGGCATTGCAAAATCTGATTCCAAATTCAAACAAGACAGACAAGGCGTCGATGCTGGATGAAGCTATTGAATACCTGAAACAACTTCAGCTCCAAGTACAGATGCTGTCAATGAGAAATGGTTTGAGTTTGCATTCTATGTGCTTTTCTGAAGACTTGCAGGCTCAGCAGTTTTGTCAGATGAGATCTGAGTTCAACGAAGAAAACATGTCATTGCCTTTAAACATGGCAACTACTCTGCCTTTGAACCAAGAAAATCCCTTGCAATATGAGTCCAAATCCAGTCTACCTGACAAACTCAATACACAGGACCAACCATTAGTGCCCTCTCCATCGTACACAATCAACCCAGAAACTTCTTTTGGGCTAGAATCCCCAATTCTGCCGCATATAAGATCCTTCCCACAGAAAAGAACTTCTGAGATGTGTAGCAATGAGATATTGCGGCACCAGCAATTAAATTCGAGCCATTCAGATACCAATCCTTTAGGTGGTTCTCAAGTGTCACACGCCTTTGATATGCAAACGCCCGAGCAGAAGGACAGGGGCTTTGAAACAGGCATTGCGGGAAAAGATCAATTGGCATCAATCCGAAGAAAAGATCAGGGGCTTTGA 1182 0.4552 MGDMYHYGNTENHNFPASSTSSSPQDEISLFLRQILLRSSSSSASSSLLVTHTAKNAHTSMSGLRSSHATLENNAHLSHRSSLFQDGISVADSSIGVGAPNDAFLSSSETYTLANKKDSSAANVPSSSFGVSENEFDEYDCESEEGIEALVEQQPVKSVPPRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHSMCFSEDLQAQQFCQMRSEFNEENMSLPLNMATTLPLNQENPLQYESKSSLPDKLNTQDQPLVPSPSYTINPETSFGLESPILPHIRSFPQKRTSEMCSNEILRHQQLNSSHSDTNPLGGSQVSHAFDMQTPEQKDRGFETGIAGKDQLASIRRKDQGL 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0284 393 FunFam Basic helix-loop-helix transcription factor 164 227 - -
Lele49g0284 393 Pfam Helix-loop-helix DNA-binding domain 173 219 IPR011598 GO:0046983
Lele49g0284 393 CDD bHLH_AtPIF_like 169 231 - -
Lele49g0284 393 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 21 346 IPR031066 -
Lele49g0284 393 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 229 IPR036638 GO:0046983
Lele49g0284 393 MobiDBLite consensus disorder prediction 370 393 - -
Lele49g0284 393 MobiDBLite consensus disorder prediction 1 22 - -
Lele49g0284 393 MobiDBLite consensus disorder prediction 167 181 - -
Lele49g0284 393 SMART finulus 175 224 IPR011598 GO:0046983
Lele49g0284 393 Gene3D - 164 228 IPR036638 GO:0046983
Lele49g0284 393 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 169 218 IPR011598 GO:0046983
Lele49g0284 393 MobiDBLite consensus disorder prediction 153 181 - -
Lele49g0284 393 Coils Coil 208 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0284 Lele-ChrLele49 1674116 1676484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0284 7 371 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 43.122 1.39e-54 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele49g0284 HLH 4.6e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0284 49 1674116 1676484 Lele49g0284 49 1674116 1676484 ECH
Lele49g0284 49 1674116 1676484 Lele51g0295 51 1673570 1675975 hybridization
Lele49g0284 49 1674116 1676484 Lele52g0303 52 1788860 1794112 hybridization