Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0283 ATGGCCGATGAAGAGCCTTCGACGACTTCCAGACGAAGGGGAAGAGGAGCCGAGGCATCGGCTCGTTCCGATGCCTTGGAACGTCTAAAAGCTCGACTCCGTGGTGGTCGCCGTTCAGATGGCGATGGATATCAAATTAAGTTGGATAACCCTATTTATGATACTGTCGCCGAGGACGAGTACAATGCGCTCGTCGCCAAGCGCCGCGAAGAAGCCCGAGGCTTCATTGTGGACGATGACGGTCTTGGGTACGGGGACGAAGGGGAGGAGGAGGATTGGTCAAAAGCTGGGTTAACTCTGTCCTCTGATGAATCGGATGGCGAAGCAGAAAAGCCAAAAAGGAAGAGACAAGAAAAGAAAGATCCGCAACCGAAAAGGCCATCATCTTCACTATCGGCTGCGGCAGCGATGATAGGGGCGCAGAGGTTGTCATCGATGTTCACTTCGTCGGTTTTTAAGAAAAGCAGGGATGATAAAGCTAAAGGATTTTCTTGTGATAGCATTGTTGACGATGTTATCGCAGAGTTTGCACCGGATGAGACTGATAGACTAAGGCGTAGACGCGGGCCAACAAATCCTTCATCTTTGCCGATTTATAATGTTAAGAGCGAGGAACCAGCGATTGGATGCCCTGATCTGACTGGAGGTCCTCTGTCGTCGGTTGGTGTTGCAAATGGCAATTATGAATCTACCAGAGTTGTGAAAAATGATGGTTATGCCTTGGGTTCTGATCAAAATTACGGAGGAGTCAAAATAGAGGCAGCTACTAAAGAATCAGAAGATGGGGGAAATATTAATTCCGATGATGGTCTGGCATCAATTATGCAAACCCATAGTGGTCCAACTAACGGAGACGAGACTGGAGAGAAAATGTTAAAGGATGTTGATATAGAAGCTAAACAAACAGTGGAGAAGGAGGTATTTCTTCTGAATGCGAAAGTTAAAGAAGAAGACCCTGCACTGAGTGCGACTATTGGTTGGCAGGCAGCCAAGAGCGGGGGAGATGTCAATGTTGTCGATTCACAGGTGGCCGACGAAGCTTTAAATAGTGAAGAAAACTTGGAGTTCAATCTGGAGGCTGATGGGTCGCTGCCTTTCTACATACTTGATGCCTATGAGGAATTCTATGGAGCTAACATGGGTACGCTGTATCTGTTTGGGAAGGTCAAAACAGGTAATTCGTATCAGAGTTGCTGTGTTGTTGTAAAGAACATGCAGAGGTGTGTCTATGCAATTCCAAGTCGTCCTTTACATCACACTGATGAGATGATGGAACTTGAGAAGGATGTTGAAGAGTCTCGGATTTCTCGTACAGACTTTCACAAAAAGCTGCTAGATATGTTGTCTGGTTTAAAGAATGAGATAGCAAAACAGCTGCTAGATCTGAACGCTTCAACCTTTAGTATGAAACCTGTTAAGAGGAAGTACGCATTTGAATGTTCTGAAATACCTGCTGGTGAAAATTATGTGCTGAAAATCAACTATCCATTCAAGGATCCACCACTTCCAGTAGATCTGAAAGGAGAGAGTTTCTTTGCTCTTCTAGGAACTCATTGCAGTGCGTTGGAGCTTTTTCTAATTAAAAGAAAGATAAAGGGGCCTTCATGGCTACTGGTTTCAAACTTTTCTTCCCGCCTTGCTTCTCAAAGGGTTAGCTGGTGCAAATTTGAAGTGACTGTTGACTCTCCTAAAGACATAAGGATTTCAACTTCCTCCAAATCCTGTTTTGAGATTCCTCCCGTGGTTGTCACAGCTATAAATTTGAAAACCATCATAAATGAAAAACAAAACTTAAACGAGATTGTCTCTGCATCCATTGTTTGCTGCCGCAGGGTCAAGATAGACACTCCCATGTTGGCTTCAGAATGGAAGAGACCTGGACTACTGACCCATTTTACTGTTGTCCGTAAGCTTGATGGAGGCATATTTCCACTGGGTTTCAACAAGGAAGTTACAGACCGAAACACAAAAGCTGGCTCAAATGTTCTTGAAAGGGCTTTACTAAACCGCCTAATGATAGAATTGCACAAGTTGGATAGTGATGTTCTTGTTGGACATAACATTTCTGGATTTGACCTGGATGTTCTTCTTCACAGATGTCAGGCTTCTAAAGTGCCAAGCAGCATGTGGTCCAAAACAGGCCGACTTAAACGGTCTGTGATGCCTAAACTTACCAGAGTAAGCACTGTTTTTGGTTCTGGAGCTACTCCTGGCATCTTGTCTTGCATTGCTGGTCGGCTTCTTTGTGATACATACTTGTGTGCTCGTGACCTATTAAAGGAGGTTAGCTACTCTTTATCTCAACTATCAAAAACTCAGCTGAATAAAGTTCGAAAGGAAGTTGCTCCACATGATGTTCCAAAAATGTTCCAATCAACAGAATCCCTTATGGAACTTATTGAGTATGGCGAGACAGATGCATGGTTGTCGATGGAACTCATGTTTCATTTGAGTGTTCTCCCCCTCACACGTCAACTGACTAATATTAGTGGTAATTTGTGGGGGAAAACACTACAGGGTGCAAGGGCACAGAGAGTTGAGTATCTTCTGTTGCATGCTTTCCATGCAAAGAAATATATTGTGCCAGACAAGATTCCTTCCCATGCAAAAGAAACAAAATTGACAAAACGCAGAGTAACTCATGTTGTTGAGGATGTTGGCTTTGACGAAGTTATTGACAATACAAACTATGACAATGATGCTCCTGACAGTGATCATGGTAAAAGCAAGAAGACTCCGTCCTATGCTGGAGGACTGGTTTTGGAGCCTAAAAGGGGTTTATATGACAAATATATATTGCTCTTGGACTTCAATAGTCTTTATCCTTCTATAATTCAGGAATACAATATCTGCTTCACAACTGTTGAAAGATCTGCAGATGGTTCTTTTCCTCGTCTGCCATCTAGCAAAACAACTGGAGTTTTGCCAGAGTTGCTGAAAAATTTGGTTCAAAGGAGGAGAATGGTGAAGTCGTGGATGAAAACTGCTTCTGGTCTTAAAGTTCAGCAACTGGACATTCAGCAACAAGCACTTAAGCTTACTGCAAACAGTATGTACGGATGTCTTGGATTTGCTAATTCAAGATTTTATGCAAAACCGCTTGCTGAGCTTATAACCCAGCAGGGAAGGGAGATATTACAAAGTACTGTTGATCTTGTTCAGAATAACTTGAACTTAGAGGTGATCTATGGCGACACTGATTCAATAATGATTTACAGTGGACTAGATGATATTGCAAGAGCAAAAGCAATGGCTGGAAAAGCAATTCAAGAGGTCAACAAGAAATATAGGTGCTTGGAAATTGATCTTGATGGTTTGTACAAGAGAATGCTGCTGCTTAAGAAGAAGAAATATGCAGCTGTAAAGGTGCAGTTCAAAGATGGCACGCCATATGAGGTTATTGAACGTAAAGGTCTGGACATTGTTCGTCGTGACTGGAGCCTATTATCTAAAGAAATAGGAGATTTTTGCCTCGGTCAAATTTTGTCAGGAGGGTCATGTGAGGATGTTGTCGAATCAATTCACAGCTCTCTTTGTAAGGTGCAAGAAGAGATGAGGAGTGGACAAGTGCCGTTAGAGAAATATATCATCACTAAGACATTGACTAAACCTCCTGAAGCCTATCCAGACGCCAAAAATCAACCGCATGTTCTTGTGGCACAACGGTTGAAGCAAAAGGGCTACTCCACTGGTTGTTCTGTTGGTGATGCGATCCCTTACATTATTTGCTATGAGCAGGGCAGCAATTCAAGCAGTGGAACAAGTATTGCTCAACGTGCTAGACATCCTGAGGAACTAAAACAAGAACAAGGGAAATGGATGATTGACCTTGATTATTACCTCTCACAACAGCTTCATCCGGTTGTATCACGTCTCTGTGCATCAATTCAGGGCACGAGTCCAGAAAGACTGGCTGATTGTTTAGGGCTTGATGCATCAAAAGTAGAATCGCTTTCCTTCTGTTTTCAACACAAGTCAAGTGAAGCCTTCAATGGTGAGCCTTCAAGTTCACTCTTGTTTGCTGCCGATGACAAAGAGAGGTTTCAAGGATGTGAGCCGTTGGCTTTGTCATGTCCAAGCTGCTCTGGTACCTTTGACTGTCCTCCTATCTTCAAATCTATTTGTGAAGGTGCAAAGCCAACAAGCTCAGGCATGGAGGAATCAAGCTATAATTTCTGGCGTAAGCTGCGCTGTCCTAAGTGCCCAGAAGAAGATGGTGTTGGCAGAATTTCTCCTGCAATGATTGCCAATGAGGTCAAAAGGCAAGCAGACAAGTTTATTTCAATGTACTACAGAGGCTTGTTAATGTGCGACGATGAAACTTGTAAGTATTCAACACGAAGTATCAACCTTCGGCTGGTTGGTGATTCTGAAAGAGGAACTGTTTGTCCAAATTACCCTCGCTGCAATGGGCGCCTTCTAAGACAGTACACGGAGGCAGAGTTGTATAAACAGCTCTCGTATTTTTGCTATGTGTTGGATACCGTTTGCTGTATAGAAAAGATGGAGGTTAAATCTAGGATACCACTGGAGAAAGAGTTATCGAAAATTAGGCCAATGGTTGATCTGGCAGCATCAACGATACAGAAGATTCGGGATCGGTGTGCCTTTGGGTGGGTACAGATGGAGGACTTGGTCGTCACTGTATGA 4650 0.4331 MADEEPSTTSRRRGRGAEASARSDALERLKARLRGGRRSDGDGYQIKLDNPIYDTVAEDEYNALVAKRREEARGFIVDDDGLGYGDEGEEEDWSKAGLTLSSDESDGEAEKPKRKRQEKKDPQPKRPSSSLSAAAAMIGAQRLSSMFTSSVFKKSRDDKAKGFSCDSIVDDVIAEFAPDETDRLRRRRGPTNPSSLPIYNVKSEEPAIGCPDLTGGPLSSVGVANGNYESTRVVKNDGYALGSDQNYGGVKIEAATKESEDGGNINSDDGLASIMQTHSGPTNGDETGEKMLKDVDIEAKQTVEKEVFLLNAKVKEEDPALSATIGWQAAKSGGDVNVVDSQVADEALNSEENLEFNLEADGSLPFYILDAYEEFYGANMGTLYLFGKVKTGNSYQSCCVVVKNMQRCVYAIPSRPLHHTDEMMELEKDVEESRISRTDFHKKLLDMLSGLKNEIAKQLLDLNASTFSMKPVKRKYAFECSEIPAGENYVLKINYPFKDPPLPVDLKGESFFALLGTHCSALELFLIKRKIKGPSWLLVSNFSSRLASQRVSWCKFEVTVDSPKDIRISTSSKSCFEIPPVVVTAINLKTIINEKQNLNEIVSASIVCCRRVKIDTPMLASEWKRPGLLTHFTVVRKLDGGIFPLGFNKEVTDRNTKAGSNVLERALLNRLMIELHKLDSDVLVGHNISGFDLDVLLHRCQASKVPSSMWSKTGRLKRSVMPKLTRVSTVFGSGATPGILSCIAGRLLCDTYLCARDLLKEVSYSLSQLSKTQLNKVRKEVAPHDVPKMFQSTESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDKIPSHAKETKLTKRRVTHVVEDVGFDEVIDNTNYDNDAPDSDHGKSKKTPSYAGGLVLEPKRGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSADGSFPRLPSSKTTGVLPELLKNLVQRRRMVKSWMKTASGLKVQQLDIQQQALKLTANSMYGCLGFANSRFYAKPLAELITQQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIARAKAMAGKAIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGTPYEVIERKGLDIVRRDWSLLSKEIGDFCLGQILSGGSCEDVVESIHSSLCKVQEEMRSGQVPLEKYIITKTLTKPPEAYPDAKNQPHVLVAQRLKQKGYSTGCSVGDAIPYIICYEQGSNSSSGTSIAQRARHPEELKQEQGKWMIDLDYYLSQQLHPVVSRLCASIQGTSPERLADCLGLDASKVESLSFCFQHKSSEAFNGEPSSSLLFAADDKERFQGCEPLALSCPSCSGTFDCPPIFKSICEGAKPTSSGMEESSYNFWRKLRCPKCPEEDGVGRISPAMIANEVKRQADKFISMYYRGLLMCDDETCKYSTRSINLRLVGDSERGTVCPNYPRCNGRLLRQYTEAELYKQLSYFCYVLDTVCCIEKMEVKSRIPLEKELSKIRPMVDLAASTIQKIRDRCAFGWVQMEDLVVTV 1549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0283 1549 Pfam DNA Polymerase alpha zinc finger 1342 1545 IPR015088 GO:0003887|GO:0006260
Lele49g0283 1549 FunFam DNA polymerase 579 887 - -
Lele49g0283 1549 FunFam DNA polymerase 406 532 - -
Lele49g0283 1549 CDD DNA_polB_alpha_exo 579 825 - -
Lele49g0283 1549 Pfam DNA polymerase family B 833 1295 IPR006134 GO:0000166|GO:0003677
Lele49g0283 1549 FunFam DNA polymerase 1139 1324 - -
Lele49g0283 1549 MobiDBLite consensus disorder prediction 1 25 - -
Lele49g0283 1549 FunFam DNA polymerase 973 1022 - -
Lele49g0283 1549 MobiDBLite consensus disorder prediction 104 125 - -
Lele49g0283 1549 Gene3D - 1139 1309 IPR042087 -
Lele49g0283 1549 MobiDBLite consensus disorder prediction 269 284 - -
Lele49g0283 1549 MobiDBLite consensus disorder prediction 76 133 - -
Lele49g0283 1549 MobiDBLite consensus disorder prediction 894 915 - -
Lele49g0283 1549 SUPERFAMILY Ribonuclease H-like 361 862 IPR012337 -
Lele49g0283 1549 Gene3D - 579 884 IPR036397 GO:0003676
Lele49g0283 1549 Gene3D DNA Polymerase alpha, zinc finger 1341 1534 IPR038256 -
Lele49g0283 1549 Gene3D Helix hairpin bin 971 1022 - -
Lele49g0283 1549 Gene3D - 366 565 - -
Lele49g0283 1549 SUPERFAMILY DNA/RNA polymerases 858 1310 IPR043502 -
Lele49g0283 1549 TIGRFAM pol2: DNA polymerase (pol2) 52 1293 - -
Lele49g0283 1549 Coils Coil 1089 1109 - -
Lele49g0283 1549 PRINTS DNA-directed DNA-polymerase family B signature 1008 1020 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lele49g0283 1549 PRINTS DNA-directed DNA-polymerase family B signature 1061 1069 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lele49g0283 1549 PRINTS DNA-directed DNA-polymerase family B signature 932 945 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lele49g0283 1549 MobiDBLite consensus disorder prediction 258 288 - -
Lele49g0283 1549 CDD POLBc_alpha 908 1311 IPR045846 GO:0003887|GO:1902975
Lele49g0283 1549 FunFam DNA polymerase 1341 1535 - -
Lele49g0283 1549 Pfam DNA polymerase family B, exonuclease domain 395 768 IPR006133 -
Lele49g0283 1549 Gene3D Palm domain of DNA polymerase 901 1126 IPR023211 -
Lele49g0283 1549 Pfam DNA polymerase alpha subunit p180 N terminal 26 93 IPR024647 -
Lele49g0283 1549 Gene3D - 406 532 - -
Lele49g0283 1549 ProSitePatterns DNA polymerase family B signature. 1063 1071 IPR017964 GO:0000166|GO:0003676
Lele49g0283 1549 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 17 1548 - -
Lele49g0283 1549 SMART polmehr3 579 1075 IPR006172 GO:0000166|GO:0003676|GO:0003887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0283 Lele-ChrLele49 1660076 1671134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0283 1 1547 Core DNA Replication Machinery Family AT5G67100 61.058 0.0 1862
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0283 49 1660076 1671134 Lele49g0283 49 1660076 1671134 ECH
Lele49g0283 49 1660076 1671134 Lele51g0294 51 1660733 1671853 hybridization
Lele49g0283 49 1660076 1671134 Lele52g0302 52 1784702 1787710 hybridization