Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0279 ATGGAGTGGAATCGAGGAGCGTCTCTCGGCACCGGAACCTTTGCTTCAGTTCACTTGGCCATTCCCAGAGGAGTTTCTGCTCAATTTTCATCTCCTGCCGCCGCCAAGTCTGCTGATGTCTTCTCTTCTTCTTCCCTCGAGAACGAACAGTGCGTGCTTCATCGCCTTGGACGCTGCCCCCAGATCATCAGGTGTTTCGGTCATGATTCTACTTTTGAAAACGGTGTCGAGTATTATAATTTGTTCCTGGAATACGCCGCCGGCGGTAGTCTTGCTGATCAGCTCAAAATTTGCGGCGGTCGCTTGCCGGAATCCCATGTCAGCCGATACACCAGGTCCATCCTCCAGGGGCTCAGACATATTCACGCCAACGGGTTCGTCCACTGTGATATAAAGCTTCCCAACATTCTTCTCTTTGGCAATGGCGACGTCAAGATTGCCGACTTTGGACTCGCCAAGAAGTCAGGGGGGAAGCAGAGTGACGAAGAAATCAAGTATGAGCTCAGGGGAACTCCCATGTGTATGTCCCCGGAATCAGTAAATGACGATGAGTATGAACCTCCGGCCGATATATGGGCACTCGGATGTGCTGTGCTGGAGATGCTCACCGGAAAACCTGCCTGGGATTTCAAGGATGGATCCAATATTTTCTCACTGTTGATGCGGATTGGGACAGGGGACGAATTGCCCGAAATTCCCAATGATTTATCAGAAGATGGGAAGGACTTCCTAAGAAGGTGTCTGGTGAAGGATCCTACAGAGAGATGGACGGCGGAGGAGCTCTTGGAGCATCCCTTTGTGGCCAACGAAATTGCTTCATTAGAGCGTGTGAAAGAACCGTCGACGTCGCCGAGAAGTCACTTCGATTTTCCAGATTGGGTCTCCAATACAACAACCTCAGCTCTGAATTCACCGGAATCTGATGACTGGTGTGAATGGAAATTCGAATCGTCGCGCCTGTCCAGTACCTGTTTGTCGGAGGACAGGGTCCGGGAGTTGGCGACGAATCAGACGCCAAATTGGTCGGAATCTGACAGTTGGATTTGTGTTAGACGGGAATAG 1062 0.5094 MEWNRGASLGTGTFASVHLAIPRGVSAQFSSPAAAKSADVFSSSSLENEQCVLHRLGRCPQIIRCFGHDSTFENGVEYYNLFLEYAAGGSLADQLKICGGRLPESHVSRYTRSILQGLRHIHANGFVHCDIKLPNILLFGNGDVKIADFGLAKKSGGKQSDEEIKYELRGTPMCMSPESVNDDEYEPPADIWALGCAVLEMLTGKPAWDFKDGSNIFSLLMRIGTGDELPEIPNDLSEDGKDFLRRCLVKDPTERWTAEELLEHPFVANEIASLERVKEPSTSPRSHFDFPDWVSNTTTSALNSPESDDWCEWKFESSRLSSTCLSEDRVRELATNQTPNWSESDSWICVRRE 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0279 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Lele49g0279 353 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 322 - -
Lele49g0279 353 Gene3D Transferase(Phosphotransferase) domain 1 93 309 - -
Lele49g0279 353 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
Lele49g0279 353 ProSiteProfiles Protein kinase domain profile. 3 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele49g0279 353 Gene3D Phosphorylase Kinase; domain 1 1 92 - -
Lele49g0279 353 SMART serkin_6 3 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele49g0279 353 Pfam Protein kinase domain 5 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele49g0279 353 SUPERFAMILY Protein kinase-like (PK-like) 5 306 IPR011009 -
Lele49g0279 353 CDD STKc_MAPKKK 2 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0279 Lele-ChrLele49 1642312 1643373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0279 1 351 MAP Kinase Kinase Kinase AT4G36950 52.394 5.45e-121 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lele49g0279 Pkinase 5.2e-53 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0279 49 1642312 1643373 Lele53g0132 53 1044426 1045595 CCT
Lele49g0279 49 1642312 1643373 Lele54g0132 54 1113410 1114477 CCT
Lele49g0279 49 1642312 1643373 Lele55g1360 55 19993681 19994742 CCT
Lele49g0279 49 1642312 1643373 Lele56g1303 56 16282964 16284025 CCT
Lele49g0279 49 1642312 1643373 Lele49g0279 49 1642312 1643373 ECH
Lele49g0279 49 1642312 1643373 Lele52g0297 52 1767022 1768083 hybridization