Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0278 ATGTCTCTCTTGGATTTGGACATGGACATGCGCAAAACTTCAGAGTACGAAGGCAGCGTCATGGGCATGATTTCGATGATGATGCAAATGGAGAAGTTTCCAGCCGATCAGTTCTTTGATCCTTTCTTTAACAATCCCTCTGATTACCCTGAAGCTGACGAGTCTGGTAATAATATTGCTGCAACTACTTTCCCTTCATTCCTCAACCCTAACGAGCCTCCTGATTTTGTCAACAGTAGTCCAATTATTCAACAACCCATGGCACGGCCATCATTTCTTCGACCTGAATCTGACCATGTTCCTGAGACGAGGCTCAGAAATAGGTACAATCCCAATACGTCATGTTCTTTCCCCTGCGCTTCGGACAAGAGGAATTCAATGGCGGCCATGAGAGAGATGATATTCAGGATAGCGGTGATGCAACCGATTCAGATAGACCCAGAATCGGTGAAGCCACCGAAGCGAAGGAATGTGAAGATTTCGAAGGATCCTCAGAGCGTGGCCGCGAGGCACAGGAGGGAAAGGATAAGCGAGAGAATCAGAATTCTGCAGAGGTTAGTTCCGGGAGGGACGAAAATGGACACGGCTTCCATGTTAGACGAAGCGATACATTACGTCAAGTTCTTAAAGAAACAAGTGCAGACTCTCGAACAAGCAGGGGCTAGTAGGGCCATAGGTGTCCCTTTTTCTGGCTCCTCAAGTACTGTCAATGTCAATTATTCTGATTTCATCAAGGCACGCCAACCAGCTGGTCGAATGGTGGGTTCTATGCAAATGCTAAGTTGA 786 0.4695 MSLLDLDMDMRKTSEYEGSVMGMISMMMQMEKFPADQFFDPFFNNPSDYPEADESGNNIAATTFPSFLNPNEPPDFVNSSPIIQQPMARPSFLRPESDHVPETRLRNRYNPNTSCSFPCASDKRNSMAAMREMIFRIAVMQPIQIDPESVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGASRAIGVPFSGSSSTVNVNYSDFIKARQPAGRMVGSMQMLS 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0278 261 Coils Coil 199 219 - -
Lele49g0278 261 Pfam Helix-loop-helix DNA-binding domain 170 209 IPR011598 GO:0046983
Lele49g0278 261 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 51 240 IPR045843 GO:0003700|GO:0006355
Lele49g0278 261 SMART finulus 166 215 IPR011598 GO:0046983
Lele49g0278 261 Gene3D - 159 225 IPR036638 GO:0046983
Lele49g0278 261 FunFam BHLH transcription factor 163 225 - -
Lele49g0278 261 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 219 IPR036638 GO:0046983
Lele49g0278 261 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 209 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0278 Lele-ChrLele49 1620923 1621708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0278 89 227 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 68.212 6.55e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele49g0278 HLH 1.7e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0278 49 1620923 1621708 Lele49g0278 49 1620923 1621708 ECH
Lele49g0278 49 1620923 1621708 Lele51g0290 51 1632796 1633575 hybridization
Lele49g0278 49 1620923 1621708 Lele52g0296 52 1757686 1758471 hybridization