Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0248 ATGGACTTGAGCTTGGATTTGAGTTTGTCTTTTGTTCCCAAAACCATTTCTGAATTTCTTGGTGAGGTCTCTAAGACCGGAGACAGTCACGAGAAATTAACGACGCTTGACGACATCGTCAAGAGATTGGAGGATGAAATGAGGAAGATCGAAGCCTTCAAACGCGAGCTTCCATTCTGCATGCTGCTCATAAACGATGCTATAACGAGGTTGAACGAGGAGAAAGTACGGTTCGTGGAAGTGCTAGATCGACCTGAGATTGAAGAATTCATATCGTTGAAAGCAAATTCTGGAGAAAACCGACAATTAACTATGGAAAAGGAAAGCTGTGACAAGAAGAACTGGATGACCTCTGCTCAACTGTGGAGCGCTGAAACCAAATTGGGAAGTGAAAATAATCGGTCTGTGCCGGAGAACCCAATTCAGTCACGAAATCTGAAAAACAGAGGAGGGGCATTAATCCCCTTTAATGGAGATTTGGGTATATCAGAGCCTGTAACGAAGGAAGATAAGGAAATCACTCAAGTTCCTAGTCTTAGCTTGATGACTCCAGCGTCTGAACTGAATCTGAAGAATTCAAAAACTTGTAGCAGAAATTGTTCGGGTGCGTCTTTCCTTACAGGCCGTCTTGACGGACAAGTCCAACCACAACCTCAACATTTGCAACAAAATCCTAGAAAACAAAGGCGATGCTGGTCTCCGGAGCTTCACCGGCGATTTGTTGATGCGCTTCAACAACTGGGAGGAGCGCAAGTGGCCACTCCAAAACAGATAAGAGAATTAATGCAGGTGGAAGCCATAACAAATGATGAAGTGAAAAGCCATTTGCAAAAATACAGACTTCATGTGAGAAGACTTCCGTCTTCAACAATTAACCAAGGAAATGGCTTGTGGATGGTAGAAGATCAAAGTGGAGAAAAGTCAAAAGTAAACTTATCGCAGTCTGGTTCTCCCCAAGGACCTCTCTTACTTGCAGGTTCTGCTAAGGGGCTGTCGAGTTCTGGAGATGGTGAAGAAGATGAGAAATCAGATTGCCATAGTTGGAAAGGTGGCTTGCACCAGCAAGCAGAAGCTGATATACTGTCTTAA 1089 0.4389 MDLSLDLSLSFVPKTISEFLGEVSKTGDSHEKLTTLDDIVKRLEDEMRKIEAFKRELPFCMLLINDAITRLNEEKVRFVEVLDRPEIEEFISLKANSGENRQLTMEKESCDKKNWMTSAQLWSAETKLGSENNRSVPENPIQSRNLKNRGGALIPFNGDLGISEPVTKEDKEITQVPSLSLMTPASELNLKNSKTCSRNCSGASFLTGRLDGQVQPQPQHLQQNPRKQRRCWSPELHRRFVDALQQLGGAQVATPKQIRELMQVEAITNDEVKSHLQKYRLHVRRLPSSTINQGNGLWMVEDQSGEKSKVNLSQSGSPQGPLLLAGSAKGLSSSGDGEEDEKSDCHSWKGGLHQQAEADILS 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0248 362 MobiDBLite consensus disorder prediction 129 148 - -
Lele49g0248 362 MobiDBLite consensus disorder prediction 334 348 - -
Lele49g0248 362 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 8 349 IPR044787 GO:0003700|GO:0006355
Lele49g0248 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 224 284 IPR017930 -
Lele49g0248 362 Coils Coil 36 56 - -
Lele49g0248 362 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 227 282 IPR006447 GO:0003677
Lele49g0248 362 FunFam Myb family transcription factor 226 284 - -
Lele49g0248 362 Gene3D - 226 283 - -
Lele49g0248 362 SUPERFAMILY Homeodomain-like 225 285 IPR009057 -
Lele49g0248 362 MobiDBLite consensus disorder prediction 129 146 - -
Lele49g0248 362 MobiDBLite consensus disorder prediction 308 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0248 Lele-ChrLele49 1444066 1445650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0248 1 277 G2-like Transcription Factor Family AT4G37180 42.403 1.56e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele49g0248 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele54g0110 54 881742 889281 Lele49g0248 49 1444066 1445650 CCT
Lele55g1377 55 20207165 20208892 Lele49g0248 49 1444066 1445650 CCT
Lele56g1322 56 16492798 16503171 Lele49g0248 49 1444066 1445650 CCT
Lele49g0248 49 1444066 1445650 Lele51g0258 51 1465097 1470995 hybridization
Lele49g0248 49 1444066 1445650 Lele52g0266 52 1549683 1551274 hybridization