LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele49g0217	ATGGCCTCTCAAAGCTTCAATTCTACCCTCTGTCACTTTGCTTTTGCTATTGCAATCCTTTTCATTTTTCCTCCTGCCCTTACTTCTGCCAAGATGACTGGGTTGAGCATGAACGTGATTGATAAATGTTGGAGAACGAACTCCCTGTGGCGGAGGCATCGCCCGCAACTGGCAACTTGTTCTGTGGGGTACGCCGGCAAGATGACCAACAACGTTGGCAAAGACCTCGTCCACTACGAAGTCACTGATCCTAGTGACGACCCAATAAACCCCAAACCTGGCACGTTGAGATATGGAGCTTCCATGATTCAGCGCAAAGTGTGGATCACATTCCAAAGAGACATGCATATTCAGCTTCTCAGGCCCCTTCTCATCAGCAGCTTCACCGCCATTGATGGCCGAGGCGTCACCGTTCACGTTGCTCGTAATGCATGCTTGATGATCTTCAAGGCCACCAACATCATAATACATGGCATTCGGATTCATCACTGTAAGCCTCAAGCCGCGGGGATGGTGGTGGGCCCAGAAGGGAAGGTAATTCAAGTGGGTCAGGTGGATGGGGATGCCATCAGATTGGTGACAGCGTCCAAGGTATGGATTGACCATAATACGCTGTATGATTGTCAAGATGGCCTTCTCGATGTGACGAGGGGTTCCACCGACGTGACCATCTCTAACAATTGGTTTAGGGACCAAGACAAGGTTATGCTTCTCGGACACGACGACGGTTACGCCAGGGACAAAAACATGAAGGTAACCATGGTCTACAACCACTTTGGACCTAACTGCAACCAGCGCATGCCCAGAATTCGTCATGGGTACGCACATGTGGCCAACAATCTATACCAAGGATGGGTGCAATACGCCATCGGGGGAAGCATGGGACCCAGCCTCAAAAGTGAGGCCAACCTCTTCATAGCACCAACATCTGGAAGCAAAGAGGTGACATGGAGAAATGGGAAGATGGGAGAGTGGGAATTCCATTCGGTGAGGGATGTGTTTGAGAACGGAGCATGCTTCACAGAAACAAAAGGAGGGCGCGTGCCAAAGCCTCATTATAACAGGGAACAGCTATTTGGAGTTGCGGATGCCAAATATGTGAGGGCATTGACAAGATCATCAGGCGCCTTACGTTGCACCAGAACCTCCAGATGTTGA	1158	0.5017	MASQSFNSTLCHFAFAIAILFIFPPALTSAKMTGLSMNVIDKCWRTNSLWRRHRPQLATCSVGYAGKMTNNVGKDLVHYEVTDPSDDPINPKPGTLRYGASMIQRKVWITFQRDMHIQLLRPLLISSFTAIDGRGVTVHVARNACLMIFKATNIIIHGIRIHHCKPQAAGMVVGPEGKVIQVGQVDGDAIRLVTASKVWIDHNTLYDCQDGLLDVTRGSTDVTISNNWFRDQDKVMLLGHDDGYARDKNMKVTMVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWVQYAIGGSMGPSLKSEANLFIAPTSGSKEVTWRNGKMGEWEFHSVRDVFENGACFTETKGGRVPKPHYNREQLFGVADAKYVRALTRSSGALRCTRTSRC	385

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele49g0217	385	SMART	amb_all	114	311	IPR002022	-
	Lele49g0217	385	SUPERFAMILY	Pectin lyase-like	59	344	IPR011050	-
	Lele49g0217	385	PANTHER	PECTATE LYASE 18-RELATED	35	382	IPR045032	GO:0030570
	Lele49g0217	385	Pfam	Pectate lyase	140	305	IPR002022	-
	Lele49g0217	385	PRINTS	Pollen allergen Amb family signature	356	379	IPR018082	-
	Lele49g0217	385	PRINTS	Pollen allergen Amb family signature	266	285	IPR018082	-
	Lele49g0217	385	PRINTS	Pollen allergen Amb family signature	288	307	IPR018082	-
	Lele49g0217	385	PRINTS	Pollen allergen Amb family signature	60	77	IPR018082	-
	Lele49g0217	385	PRINTS	Pollen allergen Amb family signature	186	207	IPR018082	-
	Lele49g0217	385	PRINTS	Pollen allergen Amb family signature	122	138	IPR018082	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele49g0217	Lele-ChrLele49	1290345	1291675	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele49g0217	68	322	Polysaccharide Lyase	AT5G09280	70.196	3.59e-144	409

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