Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0217 ATGGCCTCTCAAAGCTTCAATTCTACCCTCTGTCACTTTGCTTTTGCTATTGCAATCCTTTTCATTTTTCCTCCTGCCCTTACTTCTGCCAAGATGACTGGGTTGAGCATGAACGTGATTGATAAATGTTGGAGAACGAACTCCCTGTGGCGGAGGCATCGCCCGCAACTGGCAACTTGTTCTGTGGGGTACGCCGGCAAGATGACCAACAACGTTGGCAAAGACCTCGTCCACTACGAAGTCACTGATCCTAGTGACGACCCAATAAACCCCAAACCTGGCACGTTGAGATATGGAGCTTCCATGATTCAGCGCAAAGTGTGGATCACATTCCAAAGAGACATGCATATTCAGCTTCTCAGGCCCCTTCTCATCAGCAGCTTCACCGCCATTGATGGCCGAGGCGTCACCGTTCACGTTGCTCGTAATGCATGCTTGATGATCTTCAAGGCCACCAACATCATAATACATGGCATTCGGATTCATCACTGTAAGCCTCAAGCCGCGGGGATGGTGGTGGGCCCAGAAGGGAAGGTAATTCAAGTGGGTCAGGTGGATGGGGATGCCATCAGATTGGTGACAGCGTCCAAGGTATGGATTGACCATAATACGCTGTATGATTGTCAAGATGGCCTTCTCGATGTGACGAGGGGTTCCACCGACGTGACCATCTCTAACAATTGGTTTAGGGACCAAGACAAGGTTATGCTTCTCGGACACGACGACGGTTACGCCAGGGACAAAAACATGAAGGTAACCATGGTCTACAACCACTTTGGACCTAACTGCAACCAGCGCATGCCCAGAATTCGTCATGGGTACGCACATGTGGCCAACAATCTATACCAAGGATGGGTGCAATACGCCATCGGGGGAAGCATGGGACCCAGCCTCAAAAGTGAGGCCAACCTCTTCATAGCACCAACATCTGGAAGCAAAGAGGTGACATGGAGAAATGGGAAGATGGGAGAGTGGGAATTCCATTCGGTGAGGGATGTGTTTGAGAACGGAGCATGCTTCACAGAAACAAAAGGAGGGCGCGTGCCAAAGCCTCATTATAACAGGGAACAGCTATTTGGAGTTGCGGATGCCAAATATGTGAGGGCATTGACAAGATCATCAGGCGCCTTACGTTGCACCAGAACCTCCAGATGTTGA 1158 0.5017 MASQSFNSTLCHFAFAIAILFIFPPALTSAKMTGLSMNVIDKCWRTNSLWRRHRPQLATCSVGYAGKMTNNVGKDLVHYEVTDPSDDPINPKPGTLRYGASMIQRKVWITFQRDMHIQLLRPLLISSFTAIDGRGVTVHVARNACLMIFKATNIIIHGIRIHHCKPQAAGMVVGPEGKVIQVGQVDGDAIRLVTASKVWIDHNTLYDCQDGLLDVTRGSTDVTISNNWFRDQDKVMLLGHDDGYARDKNMKVTMVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWVQYAIGGSMGPSLKSEANLFIAPTSGSKEVTWRNGKMGEWEFHSVRDVFENGACFTETKGGRVPKPHYNREQLFGVADAKYVRALTRSSGALRCTRTSRC 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0217 385 SMART amb_all 114 311 IPR002022 -
Lele49g0217 385 SUPERFAMILY Pectin lyase-like 59 344 IPR011050 -
Lele49g0217 385 PANTHER PECTATE LYASE 18-RELATED 35 382 IPR045032 GO:0030570
Lele49g0217 385 Pfam Pectate lyase 140 305 IPR002022 -
Lele49g0217 385 PRINTS Pollen allergen Amb family signature 356 379 IPR018082 -
Lele49g0217 385 PRINTS Pollen allergen Amb family signature 266 285 IPR018082 -
Lele49g0217 385 PRINTS Pollen allergen Amb family signature 288 307 IPR018082 -
Lele49g0217 385 PRINTS Pollen allergen Amb family signature 60 77 IPR018082 -
Lele49g0217 385 PRINTS Pollen allergen Amb family signature 186 207 IPR018082 -
Lele49g0217 385 PRINTS Pollen allergen Amb family signature 122 138 IPR018082 -
Lele49g0217 385 Gene3D - 37 378 IPR012334 -
Lele49g0217 385 ProSiteProfiles Caspase family p10 domain profile. 298 339 IPR002138 GO:0004197|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0217 Lele-ChrLele49 1290345 1291675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0217 68 322 Polysaccharide Lyase AT5G09280 70.196 3.59e-144 409