Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0210 ATGGAAGTGCTTCCGTGTTCTGGTGTTCAATATGCTGCAGAATCTGAGGGCCCTCAACAGAGTTCAGTAACATCTTTTGTTTATGAGGGAGAACCTAATTGCTCTGAAAATGGTGAACGAGTTGAGTTGGAGGATGGTCAACGTAATGATTCATTACTTAAAATGAAAGGCCCTCAGGTGGAAGGGCAGGTTGAAGTTCAAGAGGCAGTTGGCAAACTGTCAGTTAATCCGGATTGGCAGTGCCGTGGAGTTTCAAATTGTGAATGTCGAGCTGTAGACCAAAAGGAATCTTCTAGTTTCCGTGCTTTTGATGAGGATGAGATAGATGAACCTTGCTTAAACTCAGACAACCCTATTCACTTTGTGGATACAATTGAAAGTGAATCACCAAACAACAGTAGGGATGGAGAGTTATCACTTGCTGAACCTAGTTGGCTCGAGGGCGATGAGTCTGTGGCATTGTGGGTCAAGTGGAGAGGGAAGTGGCAGGCTGGCATCAGATGTGCAAGGGCTGATTGGCCCTTATCAACTTTGAGAGCAAAACCTACGCATGGCAGGAAGAAATATTTTCCCATCGCATATAAGACCCATCAAGCAGGATTGAAAATGGTGAAGGATTTGTCCATTGCCCGGCGGTTTATAATGCAAAAGCTAGTTGTTGGGATGCTGAACATCGTTGATCAATTTCACTTTGATGCTTTAATTGAAGCTGCTCGTGATGTGATGTTCTGGGAGGAGTTTGCGTTGGAGGCTTCCCAAAGTAATGGTTATTCTGATCTGGGAAGGATGCTTCAAAAGCTGCAAAATAGCATAGTGCAGTGCTACATAAATGCTAACTGGTTACAACATGCTTTTCCCATTTGGGTTGATCGATGCCAGAATGCAAGTAGTGCTGAATTGGTAGAACTTCTAAAGGAGGAATTGTTTGATTCTATATTGTGGAATGATATCAGCACTCTATGGGATGCTCCAGTGCAACCAATATTAGGTTCTGAGTGGAAAACGTGGAAGCATGAAGTGATGAAATTGTTTTTTACCTCTCCTTCATTATATAGCAACAAAGACATGCAACAGCAGCAGACCTCTGATGGCCCCTTCCAAACAAGCCTCCAAGTTTGTCGAAAAAGACCCAAGCTTGAAGTTCGTCGTGCAGACATACATGCTTCACAAGTAGAAACTAAGGGTTCAGATCACTCTATTGCACTTGAGACTGACCCGGGCTTCTTTAGTAATCAGGACATAGTGAATACATTTGCATCTGAGACTTGTAAACAGGAGGAACTTAGGGAGGCACCTATTTCAATTGATTCACCTGGTAATTTAGCAAACAAATGGAATGACCTTGTTGTTGAATCTGCTGCAAATTCCGAGTTCTTGCATACCAAAGCTATGGAATCAACACCTACCAATGAAATGGTTGGTCCCCAATATGTAGAACCTGGTGGTAAGAATCGACAATGTGTGGCTTACATAGAAGCCAAGGGAAGACAGTGTGTGAGATGGGCAAATGATGGTGATGTTTACTGTTGTGTGCATTTGTCCTCTCGGTTTTTAGGCAGCTCTGCCAGAGAAAGACATGTTTCAGTTGATGCTCCTATATGCGAAGGCACAACTGTTCTTGGCACCAGATGCAAGCATCGAGCCCTGCCTGGCTCTTCATTCTGTAAGAAACACAGGCCCCTTGCTGAAACAGACCACACTCCAAATTTACCCCCGACTTCCCTAAAGAGGAAGCATGAAGAAAGTTACACTGGTTCGGAGAGCATGTTCTGCAAAGACATAGTACTGGCAGATGCTGAAAGTCCTTTGCAAGTGGATCCAGTTTCAGCCATAGATGATGATACCTTCCATGGAAACAGTAACTTGAATGGGAAACCCATGCATTCCCGAAATGATCATAATACAATGGAGGAACATAGCTGTATAGGTTTGTCTCCCTTTGATGACAAGAACCCCTGTTTGGAAACTCCAAAGAGGTACTTCTTGTATTGTGAAAAGCACTTGCCAAGTTGGCTCAAGCGTGTGCGAAATGGGAAGAGTAGAATAATTTCAAAAGAAGTGTTTGCAGAACTTCTGAGGGAATGCTTCTTACAGGAGCAGAAAGTTAATCTACATAAAGCATGTGAGCTTTTTTACAGGCTATTTAAAAGCATTTTATCCCTAAGAAACCCTGTTCCTAAAGAAGTTCAATTCCAGTGGGCTTTGACTGAAGCTTCTAAAGACACTAGTGTGAGAGAATTCTTTAAAAAGCTGGTTCATAGTGAAAAAGAGAGAATCAAAATGATCTGGGGATTCAACAATGACAAAGATGCGCCTTATGCGCCTTCACTCATGGAACAAATACCTCATTTCCCATCCACCGTTAATGATAGCGTTGTTAATGAAAATGTCATTGTGTGTAAGATATGCTCTGCAGAATTTCCTGATGACCAAGCACTTGGCAGCCATTGGATGGAAAACCATAAAAAGGAATCACAGTGGCTGTTTAGAGGTTATGCATGTGCTATTTGCCTGGATTCTTTTACCAACAAGAAAGTCTTGGAAAACCATGTCCAGGATAGACACCATGTGCAATTTGTTGAACAATGTATGCTTTTGCAGTGTATTCCTTGTGGTAGCCATTTTGGAAATACTGAACTACTATGGCTGCATGTTCTATCAGTTCATCCTGTTGATTTTAAGGCATTAAAAGCTCCTGAGCAGCAAACTTTGTTTACTGGCGAGGACTCTTCAATACAACTAGAAGCAGAGCAAGCAAACTCGGCCTCTCTGGAGAATAATTTGGAGAATTCAGGTGGTTCACGGAAGTTTAGTTGTAGGTTCTGTGGATTAAAGTTTGATTTATTACCTGACCTTGGTCGCCATCATCAAGCTGCTCATATGGGGCCTAATTTAGTTAGCAGCCATCCCTCGAAAAAGGGAGTTCGTTATTATGCATATAGATTAAAATCTGGCAGGCTTAGTCGTCCTAGATTCAAAAAAGGTTTGGTGTCAGCATCACATAGGATCAGAAGTAGAGCTAGTGCCAATTTAAAGAGACGCATTCAAGCCACAAAGTCGCTTGGCATTGGGGGAATAACTATACAACCTCGAGTAACCGAGACAACAAATATTGCTAAGTTACCAGAATATCAATGCTCTGCTGTTGCCAAGATTTTGTTTTCTGAGATCCAAAAGACTAAACCTCGGCCAAACAATCATGATATTATATCAATTTCTCGCTCTGCCTGCTGCAAAGTTGGCCTTCAAGCTGCACTGGAGGAGAAATTTGGAACTCTGCCTGAAAAGCTGTATCTGAAGGCTGCAAAACTTTGCAGTGAACATAATATTCTAGTGAGTTGGCACCAAGAAGGGTTTAATTGTCCTAGAGGTTGCAAGGCGCTGAGTGACCAACCTTTGCTTTCTCACTTAGCATCTCTTCCTAATGGTTTTGTAAGGCTTAAGGCTTTAAATTTGTCAGATCCTGCAGTAGACGAGTGGGAGGTGGATGAGTTTCATTACACCATCAATTCGCACCATTTAAAACCAGAATCCTTGCAAAAGGCTATAGTCTTATGTGATGACATCAGCTTTGGGAAGGAATCAGTTCCAGTGATTTGTGTAGTAGATCAAGAACTTCGAAATTCACTTCATATGGGTGGGTCTAATGAACATGATACGAATCTTTCTATGCCATGGGAGAGCTTTACCTACATTACGAAGCCAATGCTTGATCAATCCCTGAATCTTGATTCAGAGAGTCTGCAATTGGGATGTTCCTGTTCATATTCTACTTGCAGTCCTGAAACTTGTGCTCATGTATACCTTTTTGATAATGACTATGAAGATGCAAGGGACATATTTGGAAAATCAATGCGTGGCAGATTCCCATATGATGAGAATGGTCGAATGATTTTGGAGGAAGGTTACCTCGTCTACGAATGCAACTATAGCTGCAGATGTAGTAAAACTTGTCCAAACAGAATTTTGCAAAATGGAGTTCGAGTTAAACTGGAAGTTTTTAAAACAGAGAAAAAGGGATGGGCTGTAAGGGCTGGTGAAGCCATCCTACGGGGCACATTTGTGTGTGAGTATGTTGGAGAGGTTTTAAATGAGCAAGAGGCACATAACAGGCGCAAGAGGTATGGCATAGAAGGTTGCAGTTATTTCCTTGACATTGATGCTCATATTAATGACATGAGTAGATTGATTGAAGGACAAGGTCGATATGTTATTGACGCTTCTAGATATGGAAATGTCTCGAGGTTCATCAATCATAGCTGCTCGCCCAATCTTGTGAATCACCAAGTTCTTGTAGAAAGCATGGACTGTGAACGTACACATATTGGTCTTTATGCAAGTCGAGATATTGCACTGGGGGAAGAACTGGCATATGATTATCATTATGAGCTTCTGCCTGGGGAAGGTTCTCCTTGCCGCTGTGGATCTTTGAAGTGCCGGGGACGCCTTCACTGA 4455 0.422 MEVLPCSGVQYAAESEGPQQSSVTSFVYEGEPNCSENGERVELEDGQRNDSLLKMKGPQVEGQVEVQEAVGKLSVNPDWQCRGVSNCECRAVDQKESSSFRAFDEDEIDEPCLNSDNPIHFVDTIESESPNNSRDGELSLAEPSWLEGDESVALWVKWRGKWQAGIRCARADWPLSTLRAKPTHGRKKYFPIAYKTHQAGLKMVKDLSIARRFIMQKLVVGMLNIVDQFHFDALIEAARDVMFWEEFALEASQSNGYSDLGRMLQKLQNSIVQCYINANWLQHAFPIWVDRCQNASSAELVELLKEELFDSILWNDISTLWDAPVQPILGSEWKTWKHEVMKLFFTSPSLYSNKDMQQQQTSDGPFQTSLQVCRKRPKLEVRRADIHASQVETKGSDHSIALETDPGFFSNQDIVNTFASETCKQEELREAPISIDSPGNLANKWNDLVVESAANSEFLHTKAMESTPTNEMVGPQYVEPGGKNRQCVAYIEAKGRQCVRWANDGDVYCCVHLSSRFLGSSARERHVSVDAPICEGTTVLGTRCKHRALPGSSFCKKHRPLAETDHTPNLPPTSLKRKHEESYTGSESMFCKDIVLADAESPLQVDPVSAIDDDTFHGNSNLNGKPMHSRNDHNTMEEHSCIGLSPFDDKNPCLETPKRYFLYCEKHLPSWLKRVRNGKSRIISKEVFAELLRECFLQEQKVNLHKACELFYRLFKSILSLRNPVPKEVQFQWALTEASKDTSVREFFKKLVHSEKERIKMIWGFNNDKDAPYAPSLMEQIPHFPSTVNDSVVNENVIVCKICSAEFPDDQALGSHWMENHKKESQWLFRGYACAICLDSFTNKKVLENHVQDRHHVQFVEQCMLLQCIPCGSHFGNTELLWLHVLSVHPVDFKALKAPEQQTLFTGEDSSIQLEAEQANSASLENNLENSGGSRKFSCRFCGLKFDLLPDLGRHHQAAHMGPNLVSSHPSKKGVRYYAYRLKSGRLSRPRFKKGLVSASHRIRSRASANLKRRIQATKSLGIGGITIQPRVTETTNIAKLPEYQCSAVAKILFSEIQKTKPRPNNHDIISISRSACCKVGLQAALEEKFGTLPEKLYLKAAKLCSEHNILVSWHQEGFNCPRGCKALSDQPLLSHLASLPNGFVRLKALNLSDPAVDEWEVDEFHYTINSHHLKPESLQKAIVLCDDISFGKESVPVICVVDQELRNSLHMGGSNEHDTNLSMPWESFTYITKPMLDQSLNLDSESLQLGCSCSYSTCSPETCAHVYLFDNDYEDARDIFGKSMRGRFPYDENGRMILEEGYLVYECNYSCRCSKTCPNRILQNGVRVKLEVFKTEKKGWAVRAGEAILRGTFVCEYVGEVLNEQEAHNRRKRYGIEGCSYFLDIDAHINDMSRLIEGQGRYVIDASRYGNVSRFINHSCSPNLVNHQVLVESMDCERTHIGLYASRDIALGEELAYDYHYELLPGEGSPCRCGSLKCRGRLH 1484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0210 1484 Gene3D Classic Zinc Finger 784 858 - -
Lele49g0210 1484 ProSitePatterns Zinc finger C2H2 type domain signature. 800 821 IPR013087 -
Lele49g0210 1484 Pfam Zinc finger C2H2-type, 3 repeats 834 961 IPR040689 -
Lele49g0210 1484 ProSitePatterns Zinc finger C2H2 type domain signature. 939 960 IPR013087 -
Lele49g0210 1484 ProSiteProfiles Pre-SET domain profile. 1250 1326 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lele49g0210 1484 ProSiteProfiles Zinc finger C2H2 type domain profile. 832 855 IPR013087 -
Lele49g0210 1484 ProSitePatterns Zinc finger C2H2 type domain signature. 868 889 IPR013087 -
Lele49g0210 1484 ProSiteProfiles Post-SET domain profile. 1468 1484 IPR003616 -
Lele49g0210 1484 SMART c2h2final6 832 855 IPR013087 -
Lele49g0210 1484 SMART c2h2final6 937 960 IPR013087 -
Lele49g0210 1484 SMART c2h2final6 866 889 IPR013087 -
Lele49g0210 1484 SMART c2h2final6 798 821 IPR013087 -
Lele49g0210 1484 SMART preset_2 1186 1313 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lele49g0210 1484 SUPERFAMILY SET domain 1178 1474 IPR046341 -
Lele49g0210 1484 Pfam SET domain 1340 1460 IPR001214 GO:0005515
Lele49g0210 1484 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 191 1484 - -
Lele49g0210 1484 Pfam Pre-SET motif 1189 1321 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lele49g0210 1484 ProSiteProfiles Zinc finger C2H2 type domain profile. 937 965 IPR013087 -
Lele49g0210 1484 Gene3D SET domain 1165 1464 IPR046341 -
Lele49g0210 1484 ProSiteProfiles SET domain profile. 1329 1461 IPR001214 GO:0005515
Lele49g0210 1484 MobiDBLite consensus disorder prediction 560 579 - -
Lele49g0210 1484 SMART set_7 1329 1467 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0210 Lele-ChrLele49 1245828 1254119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0210 135 1483 C2H2 Transcription Factor Family AT2G23740 49.785 0.0 1310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lele49g0210 Pre-SET 2.4e-16 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0210 49 1245828 1254119 Lele51g0224 51 1257819 1266158 hybridization
Lele49g0210 49 1245828 1254119 Lele52g0226 52 1343219 1351820 hybridization