LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele49g0206	ATGCCCTTACCAACTTTTCTCTTCAAGGGAAAAAGATGTCTCAGAACTTCACATCCTTTCATACTATGCAACTCTCAGAGTGATGCTGCCGAAGGAAATAAGGAAGCTGATGACGACGACGACAATTATGACGAAGAACGAGATTATTTCAAGATGGGAATAGCAACACCGCCACTTGCATCAATAATCTCTCACTCCAAGTCCAAGACGACCCACCATTCCTTTTTTGCCTTCGACAATAAGTCCGATTTTTCCAATTTTATGTCCATGTCCCAGGATTATCATCAAGCAGGAATCTTCAGTTTCTCGAACGCATTCGAGAGATCCGCTGTAGCTCAGCAGCCTCATCAGCAGCAGCAGATCCGGAGGGACAAAGTGAGGGTGCAAGGCTTCGACCCAACACCGCCGTTAGTGGGTATTGAGGAAGACGAATCCGGAGGCCTTCCCGTATACGAAACCGCCGGTATGTTATCGGAAATGTTTAGTTTCCCTACCACGGGTGCCACCTCTACTGAATTGTTGGAACAACAACCCTTGACGGCGACGTATCGATCGTTCAGCAGGCCACAGCAGGCCGCTGCGATGGGCAGTGAGTGGTACGGAGACCAACAAGGCATGATAAGTGGTCTGGGAGATTCGAAGAATCCCCAACACCACCATCCTCATCAGCGTCAGATTTCAAGCATGAATGCGGCGGATTCAGCGGCTGCCATGCAACTTTTTCTCATGAACCCTCAAACCAGATCGCCTTCCCCTCCTCACAATCCTTCCACCAGTTCTTCTACCCTCAACATGTTGCTCCCCAATCCTTCCTCTTCTCTGCAAGAATTCCCCGCAGGCCCCGCAACGGGAGGAGCTTTTGGTCAATTCACGTGGCTTCCATTTTCTGAAGCAGGTTCTCAAAACGCCAACACCAACCAGAATCCGGGTGAGATCGGAAGGGTTGTGGAAGGCCAAGGACTTTCTTTATCGTTGTCGTCTACACTAGAAGCAGCGAAAGCCGAGGAACTGAGGATGGGTGATAGCGGGTTTCTTAATTATTACAGTCAAAGTGCAGCAGGAGGGTCCTCATCTGCTCACTATCCGTACAAGAATTTGGGTGGAGGTCAAACTCAAACTCACACATTGCATTTACAAGGAGTAGCTCAGAACCACCAAGTCCATGCTGGTTTCGAGTCATCGTTAGGGGTTGCAAATGTGTTGAGGAACTCCAAGTATGTGAAGCCTGCTAAAGAATTGCTTGAAGAATTCTGCAGCGTTGGAAGGGGTCAGTTCAAGAAGAACAAATTCACCAGGCAGAACTCCAACCCTAATTCCAATTCCGCTGTTGCTGCCGCCGCTTCTTCATCTTCAATAAAAGATCCTCCACCTTTGTCAGCCGCCGACAGGATTGAGCATCAGAGAAGGAAGGTCAAACTTCTATCCATGCTTGACGAGGTGGACCGAAGATACGGTCACTACTGCGAGCAAATGCAGATGGTGGTGAACTCGTTTGACTTGGTGATGGGTTTTGGGGCGGCGGTACCATACACGGCGCTGGCACAGAAAGCAATGTCAAGGCATTTCCGGTGTCTGAAGGATGCCATATCAGCACAACTGAAGCACAGTTGCGAGTTGCTGGGTGAGAAAGATGGGTTGGGTTCGTCGGGTTTGACTAAGGGTGAGACTCCAAGGTTGAAGCTTCTGGAGCAAAGCCTGAGGCAGCAGAGAGCCTTCCACCAGATGGGCATGATGGAGCAAGAGGCTTGGAGACCCCAGCGAGGCCTTCCTGAACGTTCTGTCAACATTTTGAGAGCCTGGCTTTTCGAGCATTTCCTCCATCCGTATCCAAGCGATGCAGATAAGCACCTGTTGGCTAGACAGACTGGGCTATCGAGAAATCAGGTATCAAACTGGTTCATTAACGCGAGGGTAAGGTTGTGGAAACCCATGGTGGAGGACATGTATCAGCAAGAGCTCAAAGAAGGTGAGGATGAAGAAGAGAGAGAAAATAGCAATAATAATGGTAACATGGCTCAAACTCCGACGCCTACCGCTACCACCACAACCACAACTACCACCACATCAACAGCAACGGCGTCAGCGTCAGCGCCACCAGCAAAAAGATCTGACGTCAGTGCCACCGAAAGAGACCCCTCACTCGTTGCAATCAATAGACAAGCCCTCTCGGAAAACCAAGCAAAGCAACAGTCGTCCACCACCACAACCATCATGGCCTCCAGCACCACCGCCTCTGAGGTGGCGCCACCGGTGTCCCAATGTTTCCGATCAGACCTGCCCCTGCACAGTCTTGATGACACGTGTCGGCATGGCAGCATGGTTGCAGAAGACTGCGGGACCGCCTCGGCCACTGCTAACAATATTGGATCTACTCTGATTAGATTCGGGACCACCGCCGGTGATGTGTCGCTCACCCTAGGGCTACGCCACGCCGGGAACATCCCTGACACTTCCCCTTTCTCCGTTAGAGATTTTGGAGGCATTTGA	2487	0.507	MPLPTFLFKGKRCLRTSHPFILCNSQSDAAEGNKEADDDDDNYDEERDYFKMGIATPPLASIISHSKSKTTHHSFFAFDNKSDFSNFMSMSQDYHQAGIFSFSNAFERSAVAQQPHQQQQIRRDKVRVQGFDPTPPLVGIEEDESGGLPVYETAGMLSEMFSFPTTGATSTELLEQQPLTATYRSFSRPQQAAAMGSEWYGDQQGMISGLGDSKNPQHHHPHQRQISSMNAADSAAAMQLFLMNPQTRSPSPPHNPSTSSSTLNMLLPNPSSSLQEFPAGPATGGAFGQFTWLPFSEAGSQNANTNQNPGEIGRVVEGQGLSLSLSSTLEAAKAEELRMGDSGFLNYYSQSAAGGSSSAHYPYKNLGGGQTQTHTLHLQGVAQNHQVHAGFESSLGVANVLRNSKYVKPAKELLEEFCSVGRGQFKKNKFTRQNSNPNSNSAVAAAASSSSIKDPPPLSAADRIEHQRRKVKLLSMLDEVDRRYGHYCEQMQMVVNSFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAISAQLKHSCELLGEKDGLGSSGLTKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEDMYQQELKEGEDEEERENSNNNGNMAQTPTPTATTTTTTTTTSTATASASAPPAKRSDVSATERDPSLVAINRQALSENQAKQQSSTTTTIMASSTTASEVAPPVSQCFRSDLPLHSLDDTCRHGSMVAEDCGTASATANNIGSTLIRFGTTAGDVSLTLGLRHAGNIPDTSPFSVRDFGGI	828

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele49g0206	828	MobiDBLite	consensus disorder prediction	666	701	-	-
	Lele49g0206	828	Pfam	Homeobox KN domain	600	639	IPR008422	GO:0003677\|GO:0006355
	Lele49g0206	828	SMART	HOX_1	583	647	IPR001356	GO:0003677
	Lele49g0206	828	SUPERFAMILY	Homeodomain-like	585	650	IPR009057	-
	Lele49g0206	828	MobiDBLite	consensus disorder prediction	652	710	-	-
	Lele49g0206	828	SMART	prehox3	395	531	IPR006563	-
	Lele49g0206	828	MobiDBLite	consensus disorder prediction	722	749	-	-
	Lele49g0206	828	FunFam	BEL1-like homeodomain protein 4	586	648	-	-
	Lele49g0206	828	MobiDBLite	consensus disorder prediction	429	464	-	-
	Lele49g0206	828	ProSiteProfiles	'Homeobox' domain profile.	580	643	IPR001356	GO:0003677
	Lele49g0206	828	MobiDBLite	consensus disorder prediction	203	229	-	-
	Lele49g0206	828	Gene3D	-	586	648	-	-
	Lele49g0206	828	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	250	665	-	-
	Lele49g0206	828	MobiDBLite	consensus disorder prediction	245	280	-	-
	Lele49g0206	828	MobiDBLite	consensus disorder prediction	429	455	-	-
	Lele49g0206	828	CDD	homeodomain	583	644	IPR001356	GO:0003677
	Lele49g0206	828	MobiDBLite	consensus disorder prediction	245	278	-	-
	Lele49g0206	828	Pfam	Associated with HOX	400	530	IPR006563	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele49g0206	Lele-ChrLele49	1224355	1231017	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele49g0206	89	630	Homeobox Transcription Factor Family	AT4G36870	51.807	5.92e-146	439

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-BELL	Lele49g0206		POX	4.4e-50	No_clan