Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0201 ATGGCCTCTCAAAGCTTCAATTCTACCCTCTGTCACTTTGCTTTTGCTATTGCAATCCTTTTCATTTTTCCTCCTGCCCTTACTTCTGCCAAGATGACTGGGTTGAGCATGAACGTGATTGATAAATGTTGGAGAACGAACTCCCTGTGGCGGAGGCATCGCCCGCAACTGGCAACTTGTTCTGTGGGGTACGCCGGCAAGATGACCAACAACGTTGGCAAAGACCTCGTCCACTACGAAGTCACTGATCCTAGTGACGACCCAATAAACCCCAAACCTGGCACGTTGAGATATGGAGCTTCCATGATTCAGCGCAAAGTCTGGATCACATTCCAAAGAGACATGCATATTCAGCTTCTCAGGCCCCTTCTCATCAGCAGCTTCACCGCCATTGATGGCCGAGGCGTCACCGTTCACGTTGCTCGTAATGCATGCTTGCTGATCTTCAAGGCCACCAACATCATAATACATGGCATTCGGATTCATCACTGTAAGCCTCAAGCCGCGGGGATGGTGGTGGGCCCAGAAGGGAAGGTAATTCAAGTGGGTCAGGTGGATGGGGATGCCATCAGATTGGTGACAGCGTCCAAGAATTCGTCATGGGTGACATGGAGAAATGGGAACATGGGGGAGTGGGAATTCCATTCGGTGAGGGATGTGTTTGAGAACGGAGCATGCTTCACAGAAACAAAAGGAGCGCGCGTGCCAAAGCCTTATTATAACAGGGAACAGCTTTTTGGAGTTGCAGATGGGAAATATGTGAGGGCATTGACAAGATCATCAGGAGCCTTACGTTGCACCAAAACCTCCAGATGTTGA 819 0.4982 MASQSFNSTLCHFAFAIAILFIFPPALTSAKMTGLSMNVIDKCWRTNSLWRRHRPQLATCSVGYAGKMTNNVGKDLVHYEVTDPSDDPINPKPGTLRYGASMIQRKVWITFQRDMHIQLLRPLLISSFTAIDGRGVTVHVARNACLLIFKATNIIIHGIRIHHCKPQAAGMVVGPEGKVIQVGQVDGDAIRLVTASKNSSWVTWRNGNMGEWEFHSVRDVFENGACFTETKGARVPKPYYNREQLFGVADGKYVRALTRSSGALRCTKTSRC 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0201 272 SMART amb_all 114 259 IPR002022 -
Lele49g0201 272 Gene3D - 37 204 IPR012334 -
Lele49g0201 272 SUPERFAMILY Pectin lyase-like 37 195 IPR011050 -
Lele49g0201 272 PANTHER PECTATE LYASE 18-RELATED 199 269 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0201 Lele-ChrLele49 1200538 1201889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0201 68 197 Polysaccharide Lyase AT5G09280 61.538 2.63e-58 186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0201 49 1200538 1201889 Lele49g0201 49 1200538 1201889 ECH
Lele49g0201 49 1200538 1201889 Lele51g0218 51 1216638 1217989 hybridization