Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0189 ATGGATCTTAGACGATGTGGTTGGTTAGATTGGAGAGAAGATGTGAGGAAGATGATTTTGACGAAGGGTGAATTGAATAGAAGAAGGAATCAAAACTTGGGTCACTCATCTCGAGCCACGCATGCCCTAACCACAAAGCCGGGAAAGTTGAGAGAGAAAGAGGATTGGAGAGTGACATCTACGACCACCATGAATCCTCATCCTATTGACGACCACATGGTGCTTGTCTCTCAGCTGTACCCTGGTGCTTACTCTCAAATAATTCCTCAACAAGGTTTCCATTTTTGGGAGACAAAGCCGAGACGACGTCGTAAGAAGAATAAGGGAGGAGAAAACGGAGACGGGGGACTAAAGAAGAGGAAGCTGAGTGCAGAGCAAGTGAATCTTCTAGAGCTAAACTTCGGGAACGAACATAAATTGGAGTCGGAACGGAAGGACCGGCTGGCTTCGGAGTTGGGCTTGGATCCTCGTCAAGTTGCTGTTTGGTTCCAAAACCGAAGGGCGCGTTGGAAGAACAAGAAGTTGGAGGAAGAGTACTCTCACCTTAAGAAAGTCCACGAGTCCACCATTCTCGAGAAATGCCACCTTGAAACCGAGGTACTGAAGCTGAAAGAGCAGCTTTCAGAAGCGGAGAAAGATATTCAACGGCTTCTGGAGACAGTCGATAGGGTATCAAGCAGCAACAGTCCCACATCGTCACAGTCCATGGAAGCTGTGAACAACCCACCATTTCTGGGAGATCTTAGTGTTGAAGCTTATGAAGATGATGTGTTTTACATGCCGCAGACCCATTACATCAATGGCATGGACGAGTGGATATACATGTGA 828 0.471 MDLRRCGWLDWREDVRKMILTKGELNRRRNQNLGHSSRATHALTTKPGKLREKEDWRVTSTTTMNPHPIDDHMVLVSQLYPGAYSQIIPQQGFHFWETKPRRRRKKNKGGENGDGGLKKRKLSAEQVNLLELNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSHLKKVHESTILEKCHLETEVLKLKEQLSEAEKDIQRLLETVDRVSSSNSPTSSQSMEAVNNPPFLGDLSVEAYEDDVFYMPQTHYINGMDEWIYM 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0189 275 ProSiteProfiles 'Homeobox' domain profile. 113 173 IPR001356 GO:0003677
Lele49g0189 275 ProSitePatterns 'Homeobox' domain signature. 148 171 IPR017970 GO:0000981|GO:0006355
Lele49g0189 275 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 108 234 IPR045224 GO:0003700
Lele49g0189 275 MobiDBLite consensus disorder prediction 96 120 - -
Lele49g0189 275 Pfam Homeodomain 119 172 IPR001356 GO:0003677
Lele49g0189 275 Coils Coil 165 185 - -
Lele49g0189 275 Coils Coil 200 227 - -
Lele49g0189 275 PRINTS Lambda-repressor HTH signature 144 153 IPR000047 GO:0003677
Lele49g0189 275 PRINTS Lambda-repressor HTH signature 153 169 IPR000047 GO:0003677
Lele49g0189 275 FunFam homeobox-leucine zipper protein ATHB-40 112 181 - -
Lele49g0189 275 MobiDBLite consensus disorder prediction 27 49 - -
Lele49g0189 275 CDD homeodomain 118 174 IPR001356 GO:0003677
Lele49g0189 275 SUPERFAMILY Homeodomain-like 117 181 IPR009057 -
Lele49g0189 275 SMART HOX_1 116 177 IPR001356 GO:0003677
Lele49g0189 275 Gene3D - 110 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0189 Lele-ChrLele49 1129608 1132689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0189 64 270 Homeobox Transcription Factor Family AT2G18550 53.636 2.51e-72 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lele49g0189 Homeodomain 4.9e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0189 49 1129608 1132689 Lele53g0068 53 527291 528737 CCT
Lele49g0189 49 1129608 1132689 Lele54g0069 54 567751 569204 CCT
Lele49g0189 49 1129608 1132689 Lele55g1429 55 20539376 20540845 CCT
Lele49g0189 49 1129608 1132689 Lele56g1362 56 16778111 16779582 CCT
Lele53g0075 53 582019 582800 Lele49g0189 49 1129608 1132689 CCT
Lele55g1423 55 20483816 20484772 Lele49g0189 49 1129608 1132689 CCT
Lele56g1355 56 16721885 16722841 Lele49g0189 49 1129608 1132689 CCT
Lele49g0189 49 1129608 1132689 Lele51g0205 51 1155735 1157314 hybridization
Lele49g0189 49 1129608 1132689 Lele52g0208 52 1226869 1228496 hybridization