Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0182 ATGCCAGTTGATTTAGATAATTCTTCGACAGCTTCAGGGGAAGCTAGCGTGTCTTCTTCTGGCAATCAGACTGCTCCTCCAAAGTCCACTGCCAAGAAGAAGAGAAATCTTCCAGGAATGCCAGATCCAGAAGCGGAGGTGATTGCCCTGTCTCCGAAAACCCTTTTAGCGACGAACCGATTCGTGTGTGAAATCTGCAACAAAGGATTTCAGAGGGATCAGAATCTTCAACTCCATCGACGGGGTCATAATCTGCCATGGAAGCTGAGGCAGAGGTCCAGCAAGGAGGTGAGGAAAAGAGTCTACGTCTGTCCCGAGCCAAGCTGCGTTCACCATGATCCCTCCAGAGCTTTGGGTGATCTTACCGGAATAAAGAAGCATTTCTGTAGAAAACATGGTGAAAAGAAGTGGAAATGTGACAAGTGTTCAAAGAAATATGCGGTTCAGTCAGATTGGAAGGCTCACTCGAAGATTTGTGGCACCAGAGAGTACAAATGCGATTGTGGGACTCTGTTTTCAAGGAGGGACAGCTTCATCACACACAGGGCATTCTGTGATGCGTTGGCAGAGGAGAGCGCAATAAATCAGCCTCAGACTCAGACTCAGACTCAAACCCTGACGCAAGCTCCTGAGAAGCCTAATTCAGAGTCGGACCCAAAAATTATGAGCGGGGATTCATCCCCTACAGTTCCTGCGCCGGCGCCGGCTCCACCACCACCACCTACAGCCCCATCTCCTGCTCCCCAGTCAAATAACGTCATACCATCAACGTTGCAGACAAAAAATCCAGAGATGCCCGAAAATCCTTCACAAATCATAGAGGAACCACAGGCCACCACGGCTCTAAACGGTAGCTGTAGCAGCAGTACTAGCTCAATCAGCAATGGCGGCACCAGCAGTACTGTATTCGCAAGCTTGTTCGCTTCCTCCACTGCTTCCGGAAGCCTGCAACCTCCTCCTCAACCTCAAGCGACTCCTGCATTTACCGACCTAATAAGGGCCATGGCTCGTCCAGATCGTCCTGCAGAGCTCTCAGGTCCTTCATCATCTGAACCCATTTCTCTCTGCCTCTCCACTAGCAATGGGTCGTCAATCTTTGGAACAGGAGGACAAGAACGTCGCCAGTATGCCCTACCACCACAGCCAGCTATGTCAGCTACCGCGCTACTACAGAAAGCCGCTCAAATGGGTGCAGCAGCAACGAACGCGTCATTGCTCCACGGCTTTGGTATAGTGTCATCTTCCTCATCTTCATCGTCATTAAGCTTGCAAGACAACGTGCCATGGGGTCAGAGGCAAGTAGAACCAGAGAATGCGTCTGTTCACGCGGGGCTTGGTCTCGGACTCCCTTGTGATGGTGGATCTGGACTGAAGGAATTGATGATGGGCACGCCGTCGGTGTTCGGTCCAAAGCACACAACCCTTGACTTTCTGGGATTGGGGATGGCGGCAGGTGGTGGCACCCCTAGTGGAGGCTTATCAGCACTCATCACTTCCATTGGTAGTGGTCTGGATGTTTCTGCCACAGCCAGACCCTTTGGTAGTGGAGAGATTTCAGGTAAAGATATTGGGAGGAGCTCGTGA 1584 0.5126 MPVDLDNSSTASGEASVSSSGNQTAPPKSTAKKKRNLPGMPDPEAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESAINQPQTQTQTQTLTQAPEKPNSESDPKIMSGDSSPTVPAPAPAPPPPPTAPSPAPQSNNVIPSTLQTKNPEMPENPSQIIEEPQATTALNGSCSSSTSSISNGGTSSTVFASLFASSTASGSLQPPPQPQATPAFTDLIRAMARPDRPAELSGPSSSEPISLCLSTSNGSSIFGTGGQERRQYALPPQPAMSATALLQKAAQMGAAATNASLLHGFGIVSSSSSSSSLSLQDNVPWGQRQVEPENASVHAGLGLGLPCDGGSGLKELMMGTPSVFGPKHTTLDFLGLGMAAGGGTPSGGLSALITSIGSGLDVSATARPFGSGEISGKDIGRSS 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0182 527 MobiDBLite consensus disorder prediction 249 270 - -
Lele49g0182 527 MobiDBLite consensus disorder prediction 1 30 - -
Lele49g0182 527 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Lele49g0182 527 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Lele49g0182 527 Gene3D Classic Zinc Finger 41 107 - -
Lele49g0182 527 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 16 486 IPR031140 -
Lele49g0182 527 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Lele49g0182 527 FunFam protein indeterminate-domain 12-like 40 108 - -
Lele49g0182 527 MobiDBLite consensus disorder prediction 195 270 - -
Lele49g0182 527 MobiDBLite consensus disorder prediction 230 248 - -
Lele49g0182 527 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Lele49g0182 527 SMART c2h2final6 61 83 IPR013087 -
Lele49g0182 527 SMART c2h2final6 102 132 IPR013087 -
Lele49g0182 527 SMART c2h2final6 137 157 IPR013087 -
Lele49g0182 527 Pfam Zinc finger, C2H2 type 61 83 IPR013087 -
Lele49g0182 527 Gene3D Classic Zinc Finger 115 195 - -
Lele49g0182 527 MobiDBLite consensus disorder prediction 1 43 - -
Lele49g0182 527 MobiDBLite consensus disorder prediction 195 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0182 Lele-ChrLele49 1103153 1105392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0182 1 527 IDZ Gene Family AT5G66730 61.368 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele49g0182 zf-C2H2 0.0054 CL0361