Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0169 ATGGGAGACTACAATGATGCTTTCATGCGCAACCAAAACGCCGCCGTGCAGGCTCGAACCAAAGCTCAGAACCGCGCCAACGTCCTCCAGCTCAAGCTGATTGGACAGAGCCATCCAACTGGTCTCACGGCTAACCTTTTGAAACTGTTTGAGCCTAGGCCTCCGTTAGAGTATAAATTACCTCCAGAAAAAAGGAAATGCCCGCCATTAACAGGGATGGCACAATTTGTGAGTAAGTTCGCTGAACCTGGAGATCCCGAATATTCTCCTCCTGTCCAAGAAGCTGAAACTCCTATGCAAAGAAGAGCTAGGATACATAAGCTAAGATTAGAGAAGGGAGCAGCAAAGGCTGCTGAAGAGCTAGAAAAATATGATCCACATAATGACCCAAATATTTCGGGAGATCCCTACAAGACCTTATTTATGGCCAGACTTAGTTATGAGACCACTGAGAGCAGAATCAAAAGGGAGTTTGAGTCATATGGTCCAATAAAACGGGTGCGGTTGGTTACAGACAAAGACACAAATAAGCCCAAGGGTTATGCTTTCATTGAGTACCTGCACACAAGGGACATGAAAGCTGCTTATAAACAAGCTGATGGTAGGAAAATTGAGGGTAGAAGGGTACTTGTGGATGTTGAACGTGGAAGGACTGTTCCTAATTGGAGGCCCCGCCGACTTGGTGGTGGGCTTGGTACTACTAGAGTAGGGGGTGAAGAAGTTAACCAGCGGTATTCTGGGAGGGAACAACTGCAATCAGGACCCTCTCGTTCTGAAGAACCAAAGGTTCAGGAGGAACGGCAGGTTGATCGGGATAGAGAGAAATCTCGTGAAAGAGGTAGGGACAGAGATAGAGAACGGGAACGATCACGGGAACGCTCTCACGATAGGAACCGTACTCGGGATCATAGGGAGGACAGACATCATAGAGATCGAGATAGGACTAGAGACAGAGACAAGGAAAGAGATCGTGGTCACAATCGAGATAGAGATAGTGGTCGTGGTCGTGGTCGTGATCGAGAGCAAGGACGTGATCGTGAGAGGGATCGTGAAAGGGACAGAGAATATGATCGCCATCGTGAAAGGGATAGGGACTATGAAGTTGGGGACCTTGAACGTGGACGCTCGCATGATAAGGAGTCTGATTATGATCGGGTTGATTCCAAACATGAGAGGGACCGACATGGGGAAAGGGAGCGAGACTATGAACCCAAGGATGATCGTGCATGGTACAATCGGTCTGAGCATGGACATAGACATGCAGACCCTGATCATGATGCTGAGGAGTATGACCACTATGAACATCATCAAGGACGAGTGCATTATGATCATGGAGATGGTGACCATTATGATCAATATCCTGACCATGATAGGCTGGAGGATGGCTACCACAATGAGCACACAGCATCTGAATCTCATGACCGGGAGAAAAATCGTGATACAGAGAGGTCTCTTTCCCGAGAGTATGATTACTAA 1476 0.4763 MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKLPPEKRKCPPLTGMAQFVSKFAEPGDPEYSPPVQEAETPMQRRARIHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFMARLSYETTESRIKREFESYGPIKRVRLVTDKDTNKPKGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRYSGREQLQSGPSRSEEPKVQEERQVDRDREKSRERGRDRDRERERSRERSHDRNRTRDHREDRHHRDRDRTRDRDKERDRGHNRDRDSGRGRGRDREQGRDRERDRERDREYDRHRERDRDYEVGDLERGRSHDKESDYDRVDSKHERDRHGERERDYEPKDDRAWYNRSEHGHRHADPDHDAEEYDHYEHHQGRVHYDHGDGDHYDQYPDHDRLEDGYHNEHTASESHDREKNRDTERSLSREYDY 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0169 491 SUPERFAMILY RNA-binding domain, RBD 126 238 IPR035979 GO:0003676
Lele49g0169 491 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 209 IPR000504 GO:0003723
Lele49g0169 491 Gene3D - 125 250 IPR012677 -
Lele49g0169 491 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 216 IPR000504 GO:0003723
Lele49g0169 491 SMART rrm1_1 139 212 IPR000504 GO:0003723
Lele49g0169 491 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 41 129 IPR022023 -
Lele49g0169 491 CDD RRM_snRNP70 137 227 IPR034143 GO:0030619
Lele49g0169 491 MobiDBLite consensus disorder prediction 259 491 - -
Lele49g0169 491 MobiDBLite consensus disorder prediction 220 491 - -
Lele49g0169 491 FunFam U1 small nuclear ribonucleoprotein 70 kDa 125 250 - -
Lele49g0169 491 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 61 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0169 Lele-ChrLele49 1033652 1038108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0169 140 186 C2H2 Transcription Factor Family AT2G19380 40.426 6.19e-07 50.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0169 49 1033652 1038108 Lele51g0187 51 1062024 1066411 hybridization
Lele49g0169 49 1033652 1038108 Lele52g0189 52 1117020 1121398 hybridization