Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0167 ATGGAGAACGGAGTGAAGAGCAATGGAGATGCAAAGTCACCGACTTTGGTAGAAAATAATGAGTGTTTCTTATTTTCCGATAAATTGCTTATGTGGCTTGTGTTTCCATCTTCCCTGGTCCTTTCTAATGCGAAGATGGAGACAGAGGAAGTAGATGTTAAGGATGACGAGCCTTTTATATCAAGGTCCATGGAAGAAGAGGAAATACAGCTTTTGGAAACTCGAGTCAAAGAAGAGGAGGAGGAATCCAAACATGAGGCAGATGAGGCACCAAAACTTAATGAATCTCAGTTTAGCAAGTTGGATGAGCTTTTAACACAAACCCAGCTTTACTCAGAATTTCTACTGGAGAAAATGGATGACATCACACTTAAGAAAGCCAAAAGGGCAGTAGCTGCCGTGCTTACAAGATCTAAAGAAAGTGAGACTGCTGAAGATATGGATCTGGCAGAGGAGGAAAGAATTGACAAGGAGCAGAAAGAGCTCATACGTCTGTGGACAGGTTCTACCACTGGAAATATGTTGTACTTGACGAGGCTCAAAAACTCAAAATGCAAATTAGTCCAGATGTTGAAATTCTTACCTGTTGGAAATAAACTTCTAACTGGGACACGTCTTCAGAATAACTTGGCTGAGCTATGTTCATTGTTGAACTTCATTTTACCTGACATTTTCTCATCCCTTGAAGAATTTGAGTCGTGCCAGTGGACTAAAATTTTGGATATAATGGATTACTATTTTAGTGAAAAGGGCCTTGAAGTTTGCAGAATTGATGGCAGTGTAAAGCTAAATGAAAGGAAAAGACAGGAGTTCAATGATGTGAATAGCAATTACAGGATATTTCTTCTCAGTACTAGGGCTGGTGGATTGGGAATTAACCTTACTGCAGCAGACACTTGTATCATTTATGACAGGGATTGGGGTCGCATGTTGAAAAGAGCTTTCAGCAAGTTGAAGCTTGAGCATGTGGTGATTGGAAAGGGGCAATTTCATCAAGAACGGATGAAGTCCAACCCTATGGATATCAAAGAAGAGGATGAGGAATTGTTGGAAATGCTTCACGAGGAAGAATCTGCTGAAGACAAAGCGATCCAAACAGATATTAGTGATGAAGACTTGGAGAAGCTTTTGGATCGCAGTGATCTTGCCTCTGGTTACTTAAATTGTCCGAGCAAAATTCCTCTTAAATGGCCTGGTTGGGAGGTGGTGATTCCAACTGGGAGCGTGCTTTCTACTCTGAAGTCGGAACAGCTAATTTCTCTTATCTATCTGCATAGCCCAAGATACTGTCTTGTGCTCTATGCATGTAAAAGTGATAAACCTACTCTTTCACCTGGAATAGTATCTGCAAGATCTGGGACATGTTCATGGCCAGCGTTGGATGGAAGATATATAGAGAAGGGCAACCAAGTCTCGTTTTGCTTAGTAACAAGGTTGTGGAGAAACGAAGAGAGGGAGGAGGAGGAAGATGTTAATGGAAGTGGAAGTGGAAGTGGAAGCGGTCAAAGATTGAGGCTTGGAAATGGCAAGAATGATTAA 1539 0.4139 MENGVKSNGDAKSPTLVENNECFLFSDKLLMWLVFPSSLVLSNAKMETEEVDVKDDEPFISRSMEEEEIQLLETRVKEEEEESKHEADEAPKLNESQFSKLDELLTQTQLYSEFLLEKMDDITLKKAKRAVAAVLTRSKESETAEDMDLAEEERIDKEQKELIRLWTGSTTGNMLYLTRLKNSKCKLVQMLKFLPVGNKLLTGTRLQNNLAELCSLLNFILPDIFSSLEEFESCQWTKILDIMDYYFSEKGLEVCRIDGSVKLNERKRQEFNDVNSNYRIFLLSTRAGGLGINLTAADTCIIYDRDWGRMLKRAFSKLKLEHVVIGKGQFHQERMKSNPMDIKEEDEELLEMLHEEESAEDKAIQTDISDEDLEKLLDRSDLASGYLNCPSKIPLKWPGWEVVIPTGSVLSTLKSEQLISLIYLHSPRYCLVLYACKSDKPTLSPGIVSARSGTCSWPALDGRYIEKGNQVSFCLVTRLWRNEEREEEEDVNGSGSGSGSGQRLRLGNGKND 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0167 512 Pfam Helicase conserved C-terminal domain 236 308 IPR001650 -
Lele49g0167 512 PANTHER LYMPHOID-SPECIFIC HELICASE 235 308 - -
Lele49g0167 512 Pfam SNF2-related domain 179 233 IPR000330 GO:0005524|GO:0140658
Lele49g0167 512 Gene3D - 179 232 IPR038718 -
Lele49g0167 512 Coils Coil 62 89 - -
Lele49g0167 512 MobiDBLite consensus disorder prediction 493 512 - -
Lele49g0167 512 Coils Coil 342 362 - -
Lele49g0167 512 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 212 374 IPR001650 -
Lele49g0167 512 CDD SF2_C_SNF 234 307 - -
Lele49g0167 512 Gene3D - 233 309 IPR027417 -
Lele49g0167 512 MobiDBLite consensus disorder prediction 74 93 - -
Lele49g0167 512 MobiDBLite consensus disorder prediction 485 512 - -
Lele49g0167 512 SMART helicmild6 241 336 IPR001650 -
Lele49g0167 512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 250 IPR027417 -
Lele49g0167 512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 234 381 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0167 Lele-ChrLele49 1015913 1024110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0167 235 308 RAD5 or RAD16-like Gene Family AT5G43530 36.842 7.89e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele49g0167 Helicase_C 5.5e-08 CL0023