Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0166 ATGATCATGTCTGATTCATACCTCAATCTATGGCTTCTTCCTCCCATTCTAGCTCTCCCCCTGATTATCCTTCTCTTCAAAAGAAATCAACCGAAGCTTAATCTTCCCCCAGGCCGAATGGGATGGCCCCTTGTTGGGGAAACTATTGGGTACTTGAAGCCACACCCTGCTACGACAATAGGAGAATTCATGGAACAGCATATAGCAAGGTATGGTAAAATCTTCAAGTCGTCAGTGTTTGGGGGGCCAGCGATTGTTTCAGCAGATGCAGAGCTCAATAAGTTCATATTCAACAACGAAGGAAAATTGTTCGAATGTAGCTACCCAAAAAGCATTGGTGGAATACTAGGTAAATGGTCTATGTTGGTCGTCGTTGGTGACATGCACAGAGACATGAGAGCTATAGCAGTAAACTTTATGAGCAGCCCCATGCTCAAAACAACGATGTTAAAAGACGCCGAGAAGCATGCCCTGCTTGTTCTTAACTCGTGGAAGCAGAATTCTAAATTTTCTGCTCAAGAAGAAGCGAAGAAGTTCACCTTCAATTTGATGGTGAAGAATATCTTGAGCCTGGAACCTGATAATCCTGAGGCAGAGGCGTTGAAGAAGTCGTACGCCACTTTCATGAAGGGGGTGGTTTCGGCGCCTTTGAACTTACCTGGAACGGCATACCGGAAGGCATTACAGTCTAGGTTCGCCATACTGAAGTTTATAGAGAAGAAAATGGAAGAAAGAAACCAAAGCATCAAAGAGGGTGGTGAAGGCTTGGAGGATGATGACCTTCTGAACTGGGTTTTAAAGAATTCAAATCTGACATTAGAACAAATTCTTGACTTGATTTTGAGCATGCTTTTTGCTGGGCATGAAACTTCATCCATAGCCATATCTTTCGCACTTTATTTTTTACCAGGTTGTCCTCGAGCAGTCCAACAGTTAAGGGAAGAACACAGAGAGATTGCGAGAGCCAAAAGGGAAGCAGGTGAGGTGGATTTGACTTGGGAAGACTATAAACGGATGGAGTTTACTCACTGGGTCGTCAACGAAACACTGCGGCTGGGAAATGTTGTGAGGTTTCTTCACAGGAGAGCGACCAAGGATATTCGGTACAAAGGTTATGACATTCCATGTGGGTGGAAAGTTCTTCCGGTGCTGGCAGCCGTGCATCTGGATCCTTCCCATTTTGACCATCCTCACCTCTTCGATCCCTTTAGATGGCAGAACAATGGGAGTCGTGGAGGCAGCACAGGCACGAGTAATAACTTCATGCCGTTCGGAGGAGGGGGGAGATACTGCGCTGGATCAGAGTTAGCCAAATTAGAAATGGCGATATTCATACACCATCTCATCCTCAACTATCACTGGGACTTGGCTGAAGACGATCAAGCTTTTGTGTACCCTTTCGTTGATTTTCCTAAAGGCTTGCCCATCATTGTCCAACTCGCAGCGCTTGAAGAGTTAGCGCGAATAAGCGACGGCGAGAGAGAAAAGTTAGACAAGAGGGTCGCGCGGGAGGCACCGCATAAAGACTCAGAAACCAGCTCGGAGTCGTGGAGCGACTGTGTTACTGTTAAGGAAATGTGGCGGTGCGTTGCTCGCGGTCTTCGCGTACCAGCTTCCAAGAGATCGATTCTTAGCGACTCTCTTGGATCTCACATTTCTAGATTTTTATCGACTGGGGGAAACTCCTCATACACTGTGGTGGATCATACTTATGATGCAATCGTTGTAGGCGCCGGGGGTGCAGGGTTGAGAGCCGCTATTGGACTCTCGGAACATGGGTTCAATACTGCTTGCATTACTAAGCTTTTCCCAACTCGTTCACATACTGTTGCGGCTCAGGGTGGTATAAATGCTGCACTGGGAAATATGACTGAGGATGACTGGAGGTGGCACATGTATGACACAGTCAAGGGAAGTGACTGGCTAGGTGATCAAGATGCCATCCAATATATGTGCAGAGAGGCGCCAAAGGCTGTCATTGAGCTTGAGAATTATGGATTACCATTTTCCCGAACTGAGGATGGAAAGATATACCAGCGTGCATTTGGTGGTCAAAGCCTGAACTTTGGAAAAGGTGGACAGGCATACCGTTGTGCATGTGCTGCTGATCGAACTGGACACGCTTTATTGCACACTCTTTATGGCCAGGCTATGAAACATAATACTCAATTTTTTGTGGAATATTTTGCATTGGACCTTATAGTGAATAGTGATGGTAGTTGCCAAGGAGTAATTGCGTTGAATATGGAGGATGGAACATTACATCGGTTCCAAGCTGCTTCAACAATTTTGGCCACAGGAGGCTATGGTAGGGCATACTTTTCTGCCACCTCAGCACATACATGCACAGGAGATGGTAATGCCATGGTTGCACGTGCAGGGCTCCCGCTCCAGGATTTAGAGTTTGTGCAATTTCATCCAACAGGCATATATGGAGCCGGTTGCCTAATCACAGAAGGTTCTCGTGGAGAAGGTGGAATTCTTAGGAATAGTGAAGGTGAGCGATTCATGGAACGGTATGCACCTACTGCAAAGGATCTTGCATCAAGAGATGTTGTTTCGAGATCAATGACTATGGAGATCCGGGAAGGTCGTGGTGTAGGACCTCTGAAGGATCACATCTATCTACATTTAAATCACTTGCCCCCAGATGTGCTTAAGGAAAGGCTACCTGGTATCTCTGAAACTGCTGCTATATTTGCTGGTGTGGATGTTACAAAGGAACCAATTCCTGTTTTGCCAACTGTGCACTATAATATGGGTGGTATTCCCACTAACCATCACGGAGAGGTGGTTACTATTAAAGGTGACGATCCAGATACAGTAGTACCAGGTCTGATGGCTGCTGGGGAAGCAGCTTGTGCGTCAGTTCATGGTGCCAATAGGCTTGGTGCAAATTCTCTTCTGGACATCGTTGTTTTTGGCAGAGCTTGTGCAAATAGGGTTGCAGAAATTCAAAGGCCAGGAGCAAAACAGAAGCCTCTGGAGAAGGATGCCGGTCAAAAGACAATTGCATGGCTGGACAAACTCAGAAATTCAAATGGGGCATTACCGACTTCAAATATTCGATTAAATATGCAACGAGTAATGCAAAATAATGCTGCTGTGTTCCGTACACAGGAGACATTAGAAGAAGGTTGTCAATTAATTGATAAATCATGGGAGAGCTTTCATGATGTAAAGTTGAAGGACCGTAGTCTGATATGGAACTCCGACTTGATTGAGACTCTTGAGTTGGAAAACCTTTTGATAAATGCCTGCATCACCATGCACTCGGCTGAAGCCAGGAAAGAGAGTAGAGGGGCACATGCCCGTGAGGACTTTACGAAAAGAGATGATGAGAACTGGATGAAGCACACATTAGGATACTGGGAGAATGAGAAGGTGCGCCTAGAATACAGGCCGGTGCACATGAATACATTGGATGATGAGGTTGAATCATTCCCTCCTAAAGCTCGTGTGTATTAA 3468 0.4585 MIMSDSYLNLWLLPPILALPLIILLFKRNQPKLNLPPGRMGWPLVGETIGYLKPHPATTIGEFMEQHIARYGKIFKSSVFGGPAIVSADAELNKFIFNNEGKLFECSYPKSIGGILGKWSMLVVVGDMHRDMRAIAVNFMSSPMLKTTMLKDAEKHALLVLNSWKQNSKFSAQEEAKKFTFNLMVKNILSLEPDNPEAEALKKSYATFMKGVVSAPLNLPGTAYRKALQSRFAILKFIEKKMEERNQSIKEGGEGLEDDDLLNWVLKNSNLTLEQILDLILSMLFAGHETSSIAISFALYFLPGCPRAVQQLREEHREIARAKREAGEVDLTWEDYKRMEFTHWVVNETLRLGNVVRFLHRRATKDIRYKGYDIPCGWKVLPVLAAVHLDPSHFDHPHLFDPFRWQNNGSRGGSTGTSNNFMPFGGGGRYCAGSELAKLEMAIFIHHLILNYHWDLAEDDQAFVYPFVDFPKGLPIIVQLAALEELARISDGEREKLDKRVAREAPHKDSETSSESWSDCVTVKEMWRCVARGLRVPASKRSILSDSLGSHISRFLSTGGNSSYTVVDHTYDAIVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLNFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEYFALDLIVNSDGSCQGVIALNMEDGTLHRFQAASTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLQDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDTVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIQRPGAKQKPLEKDAGQKTIAWLDKLRNSNGALPTSNIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKSWESFHDVKLKDRSLIWNSDLIETLELENLLINACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWENEKVRLEYRPVHMNTLDDEVESFPPKARVY 1155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0166 1155 TIGRFAM sdhA_forward: succinate dehydrogenase, flavoprotein subunit 569 1155 IPR011281 GO:0006099|GO:0016627|GO:0050660
Lele49g0166 1155 Gene3D Cytochrome P450 26 478 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lele49g0166 1155 Coils Coil 305 325 - -
Lele49g0166 1155 FunFam Cytochrome P450 90B1 25 480 - -
Lele49g0166 1155 FunFam Succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 561 784 - -
Lele49g0166 1155 Pfam FAD binding domain 572 968 IPR003953 -
Lele49g0166 1155 Pfam Fumarate reductase flavoprotein C-term 1024 1155 IPR015939 GO:0016491
Lele49g0166 1155 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 424 433 IPR017972 GO:0005506|GO:0016705
Lele49g0166 1155 SUPERFAMILY FAD/NAD(P)-binding domain 564 989 IPR036188 -
Lele49g0166 1155 Gene3D Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 810 913 IPR027477 -
Lele49g0166 1155 Gene3D succinate dehydrogenase protein domain 1106 1155 - -
Lele49g0166 1155 Gene3D - 572 979 IPR036188 -
Lele49g0166 1155 Gene3D - 995 1105 - -
Lele49g0166 1155 FunFam Mitochondrial succinate dehydrogenase flavoprotein subunit 810 913 - -
Lele49g0166 1155 Pfam Cytochrome P450 36 461 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lele49g0166 1155 PRINTS E-class P450 group I signature 68 87 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lele49g0166 1155 PRINTS E-class P450 group I signature 383 407 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lele49g0166 1155 PRINTS E-class P450 group I signature 431 454 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lele49g0166 1155 PRINTS E-class P450 group I signature 295 321 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lele49g0166 1155 PRINTS E-class P450 group I signature 275 292 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lele49g0166 1155 PRINTS E-class P450 group I signature 421 431 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lele49g0166 1155 SUPERFAMILY Cytochrome P450 28 477 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lele49g0166 1155 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 553 1155 IPR030664 -
Lele49g0166 1155 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 800 918 IPR027477 -
Lele49g0166 1155 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 1014 1155 IPR037099 GO:0016491
Lele49g0166 1155 ProSitePatterns Fumarate reductase / succinate dehydrogenase FAD-binding site. 606 615 IPR003952 GO:0016491
Lele49g0166 1155 FunFam Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial 1107 1155 - -
Lele49g0166 1155 FunFam Succinate dehydrogenase flavoprotein subunit (SdhA) 994 1110 - -
Lele49g0166 1155 FunFam Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial 914 979 - -
Lele49g0166 1155 TIGRFAM sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 572 1155 IPR014006 GO:0016627|GO:0022900|GO:0050660
Lele49g0166 1155 PRINTS P450 superfamily signature 344 355 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lele49g0166 1155 PRINTS P450 superfamily signature 422 431 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lele49g0166 1155 PRINTS P450 superfamily signature 431 442 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lele49g0166 1155 PRINTS P450 superfamily signature 286 303 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0166 Lele-ChrLele49 999457 1012715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0166 27 419 Cytochrome P450 AT3G50660 64.819 0.0 571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0166 49 999457 1012715 Lele51g0181 51 1029762 1038023 hybridization
Lele49g0166 49 999457 1012715 Lele52g0183 52 1087204 1091160 hybridization