Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0159 ATGCACCGTTTCTGTAGCTCCCAGGAGCACGTGATGGAACCGTGTACGTGTGGTATGATCCACGGCCAAACCAATTCCTTTTCTATGCTATTCTCGATGCCCAACAACCACAAATCCTATGGTGACTGCGGCGACATGTATTCTTTCGGTGCCTCTCCTTCCTCTTCTGTTGACTGCACCCTCTCTCTCGGCACCCCATCCACCCGTTTATCCCAGGACGAAGAAAAACGCAAGCGCCGTGGCCATCGCTCCGTTTCAAACTTCTGTTGGGACTTATTACAATCACACACTAAGTCCACTCGTGGCACCAATACTAGTAACTCCTCCAATAATGATCCCCTGCTCGCTCGTCGTTGTGCCAACTGCGACACCACTTCCACTCCCCTCTGGAGAAACGGCCCTCGAGGCCCCAAGTCACTATGCAATGCCTGTGGGATTAGATTCAAGAAGGAAGAGAGAAGGGCGAGTGCTGTAGCCGCCACAACGGCGGCCAACTCAAGCGGCGTCATGGACTCGGCGCAGATGTTTTCTGGACACCACAACAATTCATGGTACGCTCACTCTCAGAGCCAGAAAATACAGTGCCTCTCTCCGGGGATGGGCAACGAGTTTCGCTTCGTGGACGACGCTGACCGAGACGCCGAGCGCGGCATTCCATTTCTCTCTTGGAGACTCAACGTTACGGACAGACCGAGCCTCGTTCATGATTTTACGAGATGA 720 0.5347 MHRFCSSQEHVMEPCTCGMIHGQTNSFSMLFSMPNNHKSYGDCGDMYSFGASPSSSVDCTLSLGTPSTRLSQDEEKRKRRGHRSVSNFCWDLLQSHTKSTRGTNTSNSSNNDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASAVAATTAANSSGVMDSAQMFSGHHNNSWYAHSQSQKIQCLSPGMGNEFRFVDDADRDAERGIPFLSWRLNVTDRPSLVHDFTR 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0159 239 SMART GATA_3 113 165 IPR000679 GO:0006355|GO:0043565
Lele49g0159 239 Gene3D - 115 182 IPR013088 GO:0006355|GO:0008270
Lele49g0159 239 ProSiteProfiles GATA-type zinc finger domain profile. 113 149 IPR000679 GO:0006355|GO:0043565
Lele49g0159 239 Pfam GATA zinc finger 119 153 IPR000679 GO:0006355|GO:0043565
Lele49g0159 239 CDD ZnF_GATA 118 150 IPR000679 GO:0006355|GO:0043565
Lele49g0159 239 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 116 154 - -
Lele49g0159 239 ProSitePatterns GATA-type zinc finger domain. 119 144 IPR000679 GO:0006355|GO:0043565
Lele49g0159 239 PANTHER GATA TRANSCRIPTION FACTOR 18 10 239 IPR044272 GO:0003700|GO:0009908
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0159 Lele-ChrLele49 953883 954746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0159 16 239 C2C2-Gata Transcription Factor Family AT3G50870 43.253 3.45e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele49g0159 GATA 5.7e-18 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0159 49 953883 954746 Lele53g0052 53 407137 407976 CCT
Lele49g0159 49 953883 954746 Lele54g0053 54 449670 450517 CCT
Lele49g0159 49 953883 954746 Lele55g1445 55 20663817 20664654 CCT
Lele49g0159 49 953883 954746 Lele56g1380 56 16919213 16920045 CCT
Lele49g0159 49 953883 954746 Lele51g0172 51 985898 986764 hybridization
Lele49g0159 49 953883 954746 Lele52g0175 52 1040004 1040890 hybridization