Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0146 ATGAAGATTTCAAATTTATTGTGTTATCTTTCAGCGGTTCTTATTTGTATTGGTAGTTCTTTCTATCTTTCCCTTCAAGTTTCAACAAAGTCGTTCGGGTTTTTGTTTCCTTTCAGACGGGCTTTTGCAAAAATGAATGATCTGATGACGAAATCGTTTCTAAGTTATGTTGAAATGAAGAAACAGGCCCGAAAGGACCTTGAAGCCGATCTTGACATCGAAGCAGGGCAATTCAACCCCACTGAAGACCAAAACCTCTCCCAGTTCTTTGAAGAAGTTGATGCCATCAAATCCGAAATGGAAGAGATCACCAATCTCTTATTGAATCTTCAACAACTGAATGAAGAAACAAAATCAACCCACAGTACCAAAGTTCTTCGTGGGCTCAGAGACCGAATGGAATCAGACATGGTCACCATTCTTCGCAAAGCAAATAGCATCAAGACAAGGCTTGAATCACTTGACCAATCCAACGTAAGAAATCGCAAAATATCAGAATCCTTTAAAGAAGGAACCCCAGTCGATAGAACGAGAATATCAGTCACAAGTGGCCTAAGAGTCAGGCTCAGAGACTTGATGAATGAATTTCAATCCCTGAGAAACAAGATTCTATCTGATCACAAGGAGGATTTGAAGAGAAGATACTACACTGCAACAGGGGAGATACCAAGCGATGAAATAGTGGAGAAGATGGTTTCTGGGAGTGTCAAAGTTGATTTTTTCAAAACAGAGGCTGATAATATGACGGCTGAGACTCAGGTTAGGCACCTGGCTGTGATGGATATACAGAGAAGTTTAGATAAACTTCACAAGGTTTTTCTTGACATGGCTATTATTGTGGAGACACAAGGCGAGAAAGCAGACAACATTGAAAATAATGTAGCCAATGCTAGGAGCTTCGTTCATGGTGGCACTAACAGTCTTGACTATTCTAATCAGATGAGGAAGAATAAAAAAAGGGCATGGTGGATTTGTGCCGTGGGACTGATTATTCTTTTGGTGTGCTTAATTGCACTCTTGGCTTCTTGA 1029 0.4033 MKISNLLCYLSAVLICIGSSFYLSLQVSTKSFGFLFPFRRAFAKMNDLMTKSFLSYVEMKKQARKDLEADLDIEAGQFNPTEDQNLSQFFEEVDAIKSEMEEITNLLLNLQQLNEETKSTHSTKVLRGLRDRMESDMVTILRKANSIKTRLESLDQSNVRNRKISESFKEGTPVDRTRISVTSGLRVRLRDLMNEFQSLRNKILSDHKEDLKRRYYTATGEIPSDEIVEKMVSGSVKVDFFKTEADNMTAETQVRHLAVMDIQRSLDKLHKVFLDMAIIVETQGEKADNIENNVANARSFVHGGTNSLDYSNQMRKNKKRAWWICAVGLIILLVCLIALLAS 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0146 342 FunFam Syntaxin 132 242 341 - -
Lele49g0146 342 CDD SynN 86 235 IPR006011 GO:0016020
Lele49g0146 342 Coils Coil 93 120 - -
Lele49g0146 342 PANTHER SYNTAXIN 84 332 IPR045242 -
Lele49g0146 342 SUPERFAMILY t-snare proteins 84 304 IPR010989 GO:0016020|GO:0016192
Lele49g0146 342 Gene3D - 241 341 - -
Lele49g0146 342 Pfam Syntaxin 88 284 IPR006011 GO:0016020
Lele49g0146 342 CDD SNARE_syntaxin1-like 250 308 - -
Lele49g0146 342 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 249 311 IPR000727 -
Lele49g0146 342 SMART SynN_4 81 208 IPR006011 GO:0016020
Lele49g0146 342 Pfam SNARE domain 287 334 IPR000727 -
Lele49g0146 342 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 83 214 - -
Lele49g0146 342 Gene3D - 81 212 - -
Lele49g0146 342 SMART tSNARE_6 244 311 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0146 Lele-ChrLele49 888688 889716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0146 45 342 SNARE and Associated Proteins AT2G18260 60.390 2.28e-127 365
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0146 49 888688 889716 Lele51g0160 51 919223 922029 hybridization
Lele49g0146 49 888688 889716 Lele52g0165 52 983735 984631 hybridization