Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0105 ATGGATAAGCCTCACCACCACCTCCAGGCTTCCCCCATGGACAAGCCCTCCCTTCCCGATCAGAGACCCGCCTTTGACCGTTCTGACCCGACTCTCCACTTGATGACCGTCGATCCCTGCCGGACCGCCGGTGATGCCCAGGATTCCCAGTTCCTCCCCGCTCCGGTCCCACTTGCCCGCGATGCTGATGTGCCCGCAACGCAGCATGGTTGCTTGCCCAACATGGAACTCAAGGTTGATGTGAAGGTTGCGGACGGCGGCTTGGGGAAAAGGAAGCGGGGTCGGCCGGCCAGGGGTACTGCCAGTGAACCGCCATTGAAGAAGAATAGGGACGAGGAGGACGTCTGTTTCATTTGTTTCGATGGTGGGAGCCTTGTTCTCTGTGATCGCCGGGGTTGTCCTAAAGCATACCATCCCGCATGTATTAAGCGAGACGAGGCATTCTTTCGTTCAAAGGCCAAATGGAATTGCGGTTGGCATATATGTAGCGTTTGTCGGAAGGCATCCCATTATATGTGCTATACGTGTACATATTCTTTGTGCAAGGGTTGTATAAAAGGCGCCGATTACCTCTGTGTCAGAGGGAATAAAGGTCTGTGTGGGATATGCATGAGGACTATAATGCTCATTGAGAACAGTGCGCAGGGAAACAATGAAATGTGTGAAGTGGATTTTGATGATAAAAGCAGCTGGGAGTATCTTTTCAAGGTGTATTGGCTGTACTTGAAAGAGAAGCTATCTTTAACATTAGATGAGATCCTTCGAGCTAAAATCCCATGGAAAGGAGCTGCTGCCAATGGTTCTAAGTTAGAAATGCCTCAAGAAATTCATATCCATAAAGATGACAAGGGTTCCGGATCAGAGAACTCCTGTATAGACATAGAATCAAATAATTTAGAAAATAATCATTCTAATAGACAGCCAAGGCTTCTTAATAAGGAGAGCTGCCCAAATATGAACACTTCAGCCACTGACAAAGATGCACCTATGGCTGAACGCACAAAATGGGCTTCGAAGGAGCTTTTAGAGTTTGTTGCAAATATGAAAAATGGGGATGCATCTTTTCTATCTCAACGTGATGTGGAGGCTCTTTTGCTGGATTATATAAAGAAAAACAATCTTTGTGATCCTCAACAGAAAAGCCAAATTGCTTGTGATTCAAGACTAGTCAATTTGTTCAGAAAAGAGCGTTTAGGTCACATAGAAATGTTCAAGCTTCTTGAATCTCATCTTATTATAAAAGACGATGCCTCTGCCAATATTATATGGTCAGTACCGATTGATGATGTTGCTAGTCAGATGGAGGCTAATGACAATGATAATAATCAGCCAATTGTGGCGAATGATAAGAGACAGAAAACACATAGAAGGGCTGAAGTGCTGCTTGATAATCCGGACGCATATGCTGCAATAAATGCTCACAACATTAACTTGATTTACTTGCGGCGTAATCAGATGGAGAATGCAATTGAAGATGCTGAGAACTTCAAGGACAAGGTTGTTGGTTCAATTGTGCGGATAAGAATCTCCAGCCGTGATCAAAAGCAAGAGATGTATAGGCTTGTACATGTTATAGGTACCAGCAATATTGCTGAATCTTACAATATTGGGTCAAGAACAACAGGCATTGTGCTTGAAATTTCTAATTTAAACAAGAAAGAGGTCATTAAGATAAGTGAGATTTCAGATCAGGCTTTCTCCGAGGATGAATGCAAACGGTTGCGCCAGAGCATAAAATATGGGTTTTCAAAAAGATTGACTGTGGGAGAGATTCTGGACAAGGCATTGACACTTCAAGCAATTAGAGTTAATGATTTGATGGAAGACGAGATACTGCAGCTTAACCATCTTCGGGATAGAGCAAGACTTCTGAGCAGGAATGTAAATCTAGCTGTTCAGAAGTATGGCAGGATTATAGCTGTTCCTTTGTTGGGCCAGTGTGTGGAGAAGTTGCAGTTACTGAACTCACCTGAGGAACGACAGCAAAGGCTGCGAGAAATTCCAAAAGTATACTCTGATCCAAATATGGATTCAATGTTTGACTCTGATGAAGACGCTGAAAAGTCAGATGAAAGGAAGCAAGATGACAATATACAGTCTAAAAATTCTGGATTTAATAGAAGAGAGAGGGAGCCTAGTTCTCCAAGAAGTCAGGATGGTGTCCTAAATGATGTTGGATGCAAAGCACTGGACTTTTTGGTCACTGCTCAAGAGCAGATTGGGAATACATGTACAATGAAGAACCAGAACAGCCCAAATGATGCAGCAAATGGTGATAGCAATAATTTAGTAGTGTCAACGTCAGGGACATCTTGTGTTGCATCAGACCCTCCATCTTTGCCTTTCTCTACAGGAAAAGAGCAGCCATTTAATGATCTTGCAACTGATAATCTATGGCACTACCGGGATCCATCTGGGAAGATTCAAGGACCATTTTCTTTGCTGATGTTGTATAAGTGGAATGCAAGCGGGCTTTTCCCTCCTGATTTCAGAATATGGAAGAACACTGAAAACCAAGATGACTCTATATTGTTAACTGATGTATTAAGTGGGAAGTGTACTAAAAATGAGTCATTGCCATGCAGTAGCCAGCTACTATCTTTAGGGAACAGCACTGCACGGGGAGACGAAGATGATATTGATTTGCCAAGTTGCGCTCCTGTAACCAGTCCCTCAACTTGCATAGATTCTACATCTACTATTGTTCCTGCAACAAAAACATCACCAAAAAACTCAACCATTGGTTTTCTGGAATTGCCTGGTGCAAACTCTAAGCCAACTCATTCTGAACATACGGGTCAGTCTGCTGAAAATAAGCATTCCTGGAGTACTGCTTCCAGCTTAGTTGGTGGTGGGACACCACTCCCTGAAGTGACTGTTGAGTGGAGAAGATGTTCACCGGCTCCGCCTAATCCTTCTGTTGAGGAATGGGACTCCAATCTTGTCTCTGCATCTTCATTGAAGCCAGCTGAAACTGGTGGCGATTGTACCGCAACTCCATCTTCAATATGTGATCAACTTAAACATTCTTCCCCTTCCAATCCAGCCTGTAATACATCTACGTGGCAGGCAATTATTGATGAACAGAATGATTTTGGCTCATTTGACGAAACAGTTTCAGATCTGTTGGCAGAAATGGAGGCAATGGGGTCTCTTGGTAGCTTGGAATCTCCCACATCTATCATGAAATGTGGTGAGGAATTGACTGAGGGTTCTAATTGTCTCAGCCCTGCAGAGGGGCTCAGCCCAATGCCCGATGCAGGTAAAGGCGATGCACTGAGCTCCACGGGAGATTTACAATTTCCCTCTCAATCCAAAGCACCTGAGGTACCATTATGCCAACCAGATGTACATTACCATCAAAGAATCTCTGGAGGGCATTCTGGCAGAAGTGCTGAAGTAGCTGGCACAAAAAATAGTGTTTCAGGTAATCAATGGAAGTCAGGTTCAGCAACTCCATCCACAGCAACCTGGGCCATGCCTACAGATACTACTTGGAGACTCGGGCAAGACAGCAGAAGTGGTTGGGAGCCATCTCAGGTAAATACCAGCTTGGGCTGGGGTGGAATGGATAATAAAGGAAATGCAAACACAAGTTGGGGTGTAGGACAGGGGACAGTGCAGGAAAACAGGAACATAAATCCATACACTTCCGTAGGAACTCCAGCCGTTTATGGGAACCAATTTAGATATGGCAGCGATCGATTTTCTCCTCGTGGTAGGGATATGAATTCTGGTAGGGGTAGACACGTCTGGAACAGGCAACCATATGGTGGCGGAAATGGAGGCTCCCAAAGGCATCCGCCCAGAGGGCAGCGAATTTGTAAATTTTACGAAAGTGGGTACTGTAAGAAGGGAGCATCATGTGATTACTGGCACCCATGA 3885 0.445 MDKPHHHLQASPMDKPSLPDQRPAFDRSDPTLHLMTVDPCRTAGDAQDSQFLPAPVPLARDADVPATQHGCLPNMELKVDVKVADGGLGKRKRGRPARGTASEPPLKKNRDEEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDEAFFRSKAKWNCGWHICSVCRKASHYMCYTCTYSLCKGCIKGADYLCVRGNKGLCGICMRTIMLIENSAQGNNEMCEVDFDDKSSWEYLFKVYWLYLKEKLSLTLDEILRAKIPWKGAAANGSKLEMPQEIHIHKDDKGSGSENSCIDIESNNLENNHSNRQPRLLNKESCPNMNTSATDKDAPMAERTKWASKELLEFVANMKNGDASFLSQRDVEALLLDYIKKNNLCDPQQKSQIACDSRLVNLFRKERLGHIEMFKLLESHLIIKDDASANIIWSVPIDDVASQMEANDNDNNQPIVANDKRQKTHRRAEVLLDNPDAYAAINAHNINLIYLRRNQMENAIEDAENFKDKVVGSIVRIRISSRDQKQEMYRLVHVIGTSNIAESYNIGSRTTGIVLEISNLNKKEVIKISEISDQAFSEDECKRLRQSIKYGFSKRLTVGEILDKALTLQAIRVNDLMEDEILQLNHLRDRARLLSRNVNLAVQKYGRIIAVPLLGQCVEKLQLLNSPEERQQRLREIPKVYSDPNMDSMFDSDEDAEKSDERKQDDNIQSKNSGFNRREREPSSPRSQDGVLNDVGCKALDFLVTAQEQIGNTCTMKNQNSPNDAANGDSNNLVVSTSGTSCVASDPPSLPFSTGKEQPFNDLATDNLWHYRDPSGKIQGPFSLLMLYKWNASGLFPPDFRIWKNTENQDDSILLTDVLSGKCTKNESLPCSSQLLSLGNSTARGDEDDIDLPSCAPVTSPSTCIDSTSTIVPATKTSPKNSTIGFLELPGANSKPTHSEHTGQSAENKHSWSTASSLVGGGTPLPEVTVEWRRCSPAPPNPSVEEWDSNLVSASSLKPAETGGDCTATPSSICDQLKHSSPSNPACNTSTWQAIIDEQNDFGSFDETVSDLLAEMEAMGSLGSLESPTSIMKCGEELTEGSNCLSPAEGLSPMPDAGKGDALSSTGDLQFPSQSKAPEVPLCQPDVHYHQRISGGHSGRSAEVAGTKNSVSGNQWKSGSATPSTATWAMPTDTTWRLGQDSRSGWEPSQVNTSLGWGGMDNKGNANTSWGVGQGTVQENRNINPYTSVGTPAVYGNQFRYGSDRFSPRGRDMNSGRGRHVWNRQPYGGGNGGSQRHPPRGQRICKFYESGYCKKGASCDYWHP 1294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0105 1294 ProSiteProfiles Plus3 domain profile. 470 603 IPR004343 GO:0003677
Lele49g0105 1294 SMART PHD_3 115 161 IPR001965 -
Lele49g0105 1294 MobiDBLite consensus disorder prediction 289 327 - -
Lele49g0105 1294 ProSiteProfiles Zinc finger PHD-type profile. 113 179 IPR019787 -
Lele49g0105 1294 MobiDBLite consensus disorder prediction 768 787 - -
Lele49g0105 1294 SUPERFAMILY GYF domain 795 849 IPR035445 -
Lele49g0105 1294 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 203 IPR013083 -
Lele49g0105 1294 SMART swib_2 331 416 IPR019835 -
Lele49g0105 1294 MobiDBLite consensus disorder prediction 1087 1106 - -
Lele49g0105 1294 SUPERFAMILY SWIB/MDM2 domain 334 412 IPR036885 -
Lele49g0105 1294 MobiDBLite consensus disorder prediction 1124 1158 - -
Lele49g0105 1294 MobiDBLite consensus disorder prediction 1231 1270 - -
Lele49g0105 1294 Gene3D - 798 854 IPR035445 -
Lele49g0105 1294 FunFam Zinc finger CCCH domain-containing protein 19 105 205 - -
Lele49g0105 1294 Gene3D SWIB/MDM2 domain 323 420 IPR036885 -
Lele49g0105 1294 Pfam GYF domain 799 839 IPR003169 GO:0005515
Lele49g0105 1294 SUPERFAMILY FYVE/PHD zinc finger 111 167 IPR011011 -
Lele49g0105 1294 MobiDBLite consensus disorder prediction 87 108 - -
Lele49g0105 1294 Gene3D - 471 600 IPR036128 GO:0003677
Lele49g0105 1294 ProSiteProfiles SWIB/MDM2 domain profile. 330 413 IPR003121 -
Lele49g0105 1294 SUPERFAMILY Plus3-like 471 599 IPR036128 GO:0003677
Lele49g0105 1294 MobiDBLite consensus disorder prediction 681 715 - -
Lele49g0105 1294 ProSiteProfiles GYF domain profile. 796 850 IPR003169 GO:0005515
Lele49g0105 1294 SMART rtf1 470 580 IPR004343 GO:0003677
Lele49g0105 1294 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 890 1294 - -
Lele49g0105 1294 CDD SWIB-MDM2_like 336 411 - -
Lele49g0105 1294 Pfam Plus-3 domain 475 578 IPR004343 GO:0003677
Lele49g0105 1294 MobiDBLite consensus disorder prediction 1133 1158 - -
Lele49g0105 1294 ProSitePatterns Zinc finger PHD-type signature. 116 176 IPR019786 -
Lele49g0105 1294 MobiDBLite consensus disorder prediction 1 51 - -
Lele49g0105 1294 MobiDBLite consensus disorder prediction 278 330 - -
Lele49g0105 1294 MobiDBLite consensus disorder prediction 905 952 - -
Lele49g0105 1294 MobiDBLite consensus disorder prediction 925 950 - -
Lele49g0105 1294 ProSiteProfiles Zinc finger C3H1-type profile. 1269 1294 IPR000571 GO:0046872
Lele49g0105 1294 SUPERFAMILY CCCH zinc finger 1269 1293 IPR036855 GO:0046872
Lele49g0105 1294 MobiDBLite consensus disorder prediction 665 722 - -
Lele49g0105 1294 SMART gyf_5 797 852 IPR003169 GO:0005515
Lele49g0105 1294 Pfam SWIB/MDM2 domain 338 411 IPR003121 -
Lele49g0105 1294 CDD PHD5_NSD 115 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0105 Lele-ChrLele49 658380 664415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0105 113 193 PHD Transcription Factor Family AT4G14920 34.568 6.06e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Lele49g0105 Plus-3 3.4e-21 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0105 49 658380 664415 Lele56g1414 56 17185946 17192942 CCT
Lele49g0105 49 658380 664415 Lele51g0118 51 683229 689267 hybridization
Lele49g0105 49 658380 664415 Lele52g0125 52 732276 738278 hybridization