Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0103 ATGCGAACGCTTTGCGACGCTTGTGAGAGCGCTGCCGCCATCGTATTCTGCGCCGCCGATGAGGCCGCGCTCTGCCGTGCCTGCGACGAAAAGGTTCACATGTGTAATAAGCTAGCTAGCCGGCATATCAGGGTTGGCCTCGCCAGTCCAAGTGACGTGCCACGCTGTGACATTTGTGAAAATGCACCTGCTTTCTTCTATTGCGAGACAGATGGAACTTCTCTCTGTCTGCAATGTGACATGATAGTTCATGTTGGAGGTAAAAGAACACATGGAAGATATCTTCTTTTCAGGCAGCGGGTTGAATTTCCAGGAGACAAACCTGGTCTCGCAGAAACCCCGGCTTCACAGTATCTGGATGCGGTTGAGACCAAACGAGGCAAAAATTCATTGCTTAAAATAAAAATGGGAGAGAAACAACAGAATCACAGGATGCCAACCCCAGAACATGATGCTGATGGGCATGCCAAGATGGATGCTAAAATGATTGATCTGAACATGAAGCCTCAAAGAATACATGAACACGGGTCAAATAATCAGGTTAGGGTGGATGAGAAGTAA 561 0.4795 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHIRVGLASPSDVPRCDICENAPAFFYCETDGTSLCLQCDMIVHVGGKRTHGRYLLFRQRVEFPGDKPGLAETPASQYLDAVETKRGKNSLLKIKMGEKQQNHRMPTPEHDADGHAKMDAKMIDLNMKPQRIHEHGSNNQVRVDEK 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0103 186 FunFam B-box zinc finger protein 19 2 92 - -
Lele49g0103 186 Gene3D Classic Zinc Finger 2 91 - -
Lele49g0103 186 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lele49g0103 186 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 151 - -
Lele49g0103 186 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
Lele49g0103 186 Pfam B-box zinc finger 3 34 IPR000315 GO:0008270
Lele49g0103 186 SUPERFAMILY B-box zinc-binding domain 48 86 - -
Lele49g0103 186 SMART bboxneu5 51 96 IPR000315 GO:0008270
Lele49g0103 186 SMART bboxneu5 1 47 IPR000315 GO:0008270
Lele49g0103 186 CDD Bbox1_BBX-like 4 47 - -
Lele49g0103 186 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0103 Lele-ChrLele49 640654 641822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0103 1 180 C2C2-CO-like Transcription Factor Family AT4G38960 62.778 3.73e-78 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Lele49g0103 zf-B_box 1.1e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0103 49 640654 641822 Lele51g0116 51 669438 671692 hybridization
Lele49g0103 49 640654 641822 Lele52g0122 52 717140 719254 hybridization