Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0097 ATGTCGTCCGTCGGAGAAGGTGATCAGCCTGCAGAGGAGCCTAAGCCAGTGACCAAGGAGAAGAAGCCCAAGGTTCCGAAGGAGAAGGCAAGGCAGCCGAAAACGGTTTCTCATCCTCCATATTTTCAGATGATTAAGGAGGCTTTATGGGCTCTGAATGAGAAGGGTGGCTCCAGCCCCTACGCCATAGCCAAGTACATGGAGGAGAAGCATAAGTCGGTTCTTCCTGGGAATTTCAGGAAGATGTTGGCTCTTCAGCTGAAGAACCAAGCTGCGAGGGGGAAGCTCATCAAGATCAAGGCTTCCTACAAGCTGTCCTCTGAGGCCGGCAAGAAGGGCAGGGACACCGCTGGCAAGGTCACAAGGTCCGCCACACAGAAGACTCAGCGCTCTAAGCGAAGCGCGCCTAAGAAAGCAGAGACAGGTAAGAAGGCGGCGAGGAAGGTGGTTGGGGTGAAGAAGACGAAAAAATCATCCACAGCTGCGAAGCCGAAGCAGCCCAAGTCTCTCAGATCTTCATCCAAGAGGACCAGAAAAGTTACTGCCTCGGCTTCATGA 558 0.5341 MSSVGEGDQPAEEPKPVTKEKKPKVPKEKARQPKTVSHPPYFQMIKEALWALNEKGGSSPYAIAKYMEEKHKSVLPGNFRKMLALQLKNQAARGKLIKIKASYKLSSEAGKKGRDTAGKVTRSATQKTQRSKRSAPKKAETGKKAARKVVGVKKTKKSSTAAKPKQPKSLRSSSKRTRKVTASAS 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0097 185 MobiDBLite consensus disorder prediction 1 40 - -
Lele49g0097 185 MobiDBLite consensus disorder prediction 133 147 - -
Lele49g0097 185 Gene3D - 32 117 IPR036388 -
Lele49g0097 185 Pfam linker histone H1 and H5 family 38 104 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele49g0097 185 CDD H15 35 112 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele49g0097 185 MobiDBLite consensus disorder prediction 102 185 - -
Lele49g0097 185 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 37 107 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele49g0097 185 PRINTS Histone H5 signature 156 173 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele49g0097 185 PRINTS Histone H5 signature 51 68 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele49g0097 185 PRINTS Histone H5 signature 125 139 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele49g0097 185 PRINTS Histone H5 signature 24 45 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele49g0097 185 SUPERFAMILY "Winged helix" DNA-binding domain 34 114 IPR036390 -
Lele49g0097 185 PANTHER HISTONE H1 13 167 - -
Lele49g0097 185 SMART h15plus2 35 102 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele49g0097 185 MobiDBLite consensus disorder prediction 12 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0097 Lele-ChrLele49 595817 596472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0097 25 150 Single Myb Histone (SMH) Gene Family AT1G72740 32.824 2.52e-09 53.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0097 49 595817 596472 Lele53g0008 53 125818 126925 CCT
Lele49g0097 49 595817 596472 Lele54g0007 54 146282 147612 CCT
Lele49g0097 49 595817 596472 Lele55g1485 55 20964075 20965488 CCT
Lele49g0097 49 595817 596472 Lele56g1416 56 17203362 17204673 CCT
Lele49g0097 49 595817 596472 Lele51g0108 51 622791 623456 hybridization
Lele49g0097 49 595817 596472 Lele52g0113 52 673963 674630 hybridization