Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0090 ATGGCCATCAAAAGATCCAACAATCTCCCACAAACAGTTGTTCTAAAGCAAATCCTCAAGAGATGCTCGAGTTTTGGGAAGAAACAGGGGTACCATGAAGTGGGTCTTCCTGATGATGTTCCTAAAGGCCATTTTGCTGTCTATGTTGGGGAAAACAGAACCAGATACATTATACCGATTTCCTGGTTGGGTCATCCACGGTTTCAAACTCTGCTGCAAAGAGCTGAGGAGGAGTTTGGCTTCAATCATGACATGGGTCTTACCATCCCTTGTGATGAAGTTGTTTTTGAGAACCTAACGACTTGGTTACCATTTTGCCATATGGTCCTGAAATTGTTCGGAACCTTAGATTCGGATGTTAATATTCCACTAATAATGTCGTTTAGTTCACATACTAAGCTTCTGAATGTTGAAACAGGGAAAAGCCATGAACTGTTTGTTGTGATCCTTTTTTTCTCTCTCTGTCCTCCGGAATTGATTGATGGATTATTGGAGCTTAAACTCTCAGTCATGGTTTCTGTGATGAATCCAATTCTGCATATTCAGTTCTGCTACAAGTTGCCTCGTCACCACCCGTTCGTTTGCTTTAGCGTTCGTTCCAGTAGAGACGCCATGGGACGGGTCATCCGTGCACAGAGGAAGGGTGCTGGTTCAGTATTCAAGTCTCACACCCACCACCGCAAGGGTGCTGCGAGGTTCAGAAGCCTTGACTTCGGTGAGCGAAATGGGTATCTGAAAGGTGTGGTCACCGATGTCATTCACGACCCTGGTCGTGGAGCTCCTCTGGCCAAGGTTACTTTCCGCCACCCCTTTAGGTATAAGAAGCAGACGGAGCTCTTTGTTGCAGCCGAGGGTATGTACACTGGCCAGTTCGTCTACTGCGGCAAGAAAGCCTCCCTTGTCGTTGGTAACGTGTTACCCATCAGATCCATTCCCGAAGGAGCTGTTATTTGCAACGTCGAACACCACGTCGGTGACCGGGGCGTATTTGCTAGGTGTTCTGGTGATTATGCCATTGTTATCAGCCACAACCCAGATAACGACACTTCTAGAATCAAGCTTCCATCTGGTGCAAAGAAGATTGTTCCTAGTGGCTGCCGTGCCATGATTGGCCAGGTCGCAGGTGGAGGGAGAACTGAGAAGCCCCTTCTTAAGGCTGGTAATGCCTACCACAAGTTCAGGGTGAAGAGAAATTGCTGGCCTAAGGTGCGTGGTGTGGCTATGAATCCTGTGGAGCATCCTCATGGAGGAGGTAATCACCAACACATTGGTCATGCCAGTACTGTTAGGCGTGATGCTCCTCCTGGCCAGAAGGTTGGTCTCATTGCTGCTAAGAGAACCGGTCGTCTTAGGGGACAAGCTGCTGCAACTGCTGCTAAAGCTGATAAAAGTGCTTGA 1398 0.48 MAIKRSNNLPQTVVLKQILKRCSSFGKKQGYHEVGLPDDVPKGHFAVYVGENRTRYIIPISWLGHPRFQTLLQRAEEEFGFNHDMGLTIPCDEVVFENLTTWLPFCHMVLKLFGTLDSDVNIPLIMSFSSHTKLLNVETGKSHELFVVILFFSLCPPELIDGLLELKLSVMVSVMNPILHIQFCYKLPRHHPFVCFSVRSSRDAMGRVIRAQRKGAGSVFKSHTHHRKGAARFRSLDFGERNGYLKGVVTDVIHDPGRGAPLAKVTFRHPFRYKKQTELFVAAEGMYTGQFVYCGKKASLVVGNVLPIRSIPEGAVICNVEHHVGDRGVFARCSGDYAIVISHNPDNDTSRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAAKRTGRLRGQAAATAAKADKSA 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0090 465 SUPERFAMILY Nucleic acid-binding proteins 205 301 IPR012340 -
Lele49g0090 465 PANTHER RIBOSOMAL PROTEIN L2 205 459 IPR002171 GO:0003735|GO:0005840|GO:0006412
Lele49g0090 465 FunFam 60S ribosomal protein L2 374 451 - -
Lele49g0090 465 MobiDBLite consensus disorder prediction 414 465 - -
Lele49g0090 465 Gene3D Ribosomal protein L2, domain 3 374 451 IPR014726 -
Lele49g0090 465 SMART Ribosomal_L2_C_2 300 435 IPR022669 GO:0003735|GO:0005840|GO:0006412
Lele49g0090 465 Pfam Ribosomal Proteins L2, RNA binding domain 217 294 IPR022666 GO:0003735|GO:0005840|GO:0006412
Lele49g0090 465 SUPERFAMILY Translation proteins SH3-like domain 303 450 IPR008991 -
Lele49g0090 465 Gene3D - 205 290 IPR012340 -
Lele49g0090 465 Pfam Auxin responsive protein 34 101 IPR003676 GO:0009733
Lele49g0090 465 Pfam Ribosomal Proteins L2, C-terminal domain 302 429 IPR022669 GO:0003735|GO:0005840|GO:0006412
Lele49g0090 465 Gene3D - 294 373 IPR014722 -
Lele49g0090 465 FunFam 60S ribosomal protein L8 294 373 - -
Lele49g0090 465 SMART Ribosomal_L2_2 215 294 IPR002171 GO:0003735|GO:0005840|GO:0006412
Lele49g0090 465 FunFam 60S ribosomal protein L2 205 290 - -
Lele49g0090 465 ProSitePatterns Ribosomal protein L2 signature. 401 412 IPR022671 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0090 Lele-ChrLele49 551314 558722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0090 205 462 Cytoplasmic Ribosomal Protein Gene Family AT4G36130 92.248 5.23e-179 499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0090 49 551314 558722 Lele51g0102 51 583151 584626 hybridization
Lele49g0090 49 551314 558722 Lele52g0106 52 631456 632946 hybridization