Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0079 ATGCCCGCATTCCACCCCACCTCCTTTATAAATAATTCCCTGATCCCCCCTTCCTCCTCCGCCCAACTATCGGCTTTCCAATACGACATCGCATTGCACCGTAACATGCTCCCTCTCTCTCGCCCTCCCCCGCTTCCCGCCACCTGTTTATCCGGCAACTCTGTTTCCTCTTCGCCGCCAGCGTCACCTCATCGTGTTCCTATCCGACCGATCGTCGCCTCCGCCACTGCGACCGAATCTTGCTCCACTTGGACGGAGCAACCCAAATCCAGGTCCTCCTATCTCGGATCCCATACTATGTCTTCGTGCACGTCGCTGTACGAGATTCTAGGGATTCCGGCGGGCGCGTCCCATCAAGAAATTAAGGCCGCCTACCGGCGATTGGCGAGAGTGTGCCATCCGGACGTGGCGGCGGTGGATCGGAAGGATTCGTCGGCGGACCAGTTTATGAAGATTCAAGCCGCGTACTCGACTCTGTCGGATCCCGAAAAGCGAGCTACTTACGACAGGAGCCTCTTCGTCCGTCGACAGAGGCCTTTGTCCATGTCCTCTTCATTCTCCGGTTACAGTGGCCGGAACTGGGAAACGGACCAGTGTTGGTAG 603 0.5738 MPAFHPTSFINNSLIPPSSSAQLSAFQYDIALHRNMLPLSRPPPLPATCLSGNSVSSSPPASPHRVPIRPIVASATATESCSTWTEQPKSRSSYLGSHTMSSCTSLYEILGIPAGASHQEIKAAYRRLARVCHPDVAAVDRKDSSADQFMKIQAAYSTLSDPEKRATYDRSLFVRRQRPLSMSSSFSGYSGRNWETDQCW 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0079 200 Gene3D DnaJ domain 92 189 IPR036869 -
Lele49g0079 200 Pfam DnaJ domain 106 169 IPR001623 -
Lele49g0079 200 SUPERFAMILY Chaperone J-domain 99 175 IPR036869 -
Lele49g0079 200 CDD DnaJ 107 161 IPR001623 -
Lele49g0079 200 ProSitePatterns Nt-dnaJ domain signature. 149 168 IPR018253 -
Lele49g0079 200 ProSiteProfiles dnaJ domain profile. 105 172 IPR001623 -
Lele49g0079 200 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 60 199 - -
Lele49g0079 200 SMART dnaj_3 104 164 IPR001623 -
Lele49g0079 200 PRINTS DnaJ domain signature 107 125 IPR001623 -
Lele49g0079 200 PRINTS DnaJ domain signature 125 140 IPR001623 -
Lele49g0079 200 PRINTS DnaJ domain signature 144 164 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0079 Lele-ChrLele49 488620 489222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0079 95 169 C2H2 Transcription Factor Family AT1G74250 40.506 7.74e-10 55.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0079 49 488620 489222 Lele51g0090 51 515078 515575 hybridization
Lele49g0079 49 488620 489222 Lele52g0094 52 568591 569088 hybridization