Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0076 ATGGCTGAGGAGAGATCAACTGGTGTGGTTCAGTGGTTCAGCTATTCTAAAGGCTTTGGCTTTATCAAGCCCGATGATGGAGGAGAAGATCTCTTTGTTCATCAATCTTCCATCAGATCCGAAGGATGCAGTCTTGTAGAAGGCGATCGCGTCGAGTTCGTGATTGCCTCTGGTGACAACGATAAAACCAAAGCCATCGATGTGACTGGCCCCAACGGAGCTCCTCTACAATACAAGAAAGACAATTACTTTGGTCGCGATGGGGGCTATGGCTTTAGCGGTGCATGGAGGGGCGTGGTTAGGCGTAATAGCGGAGGAGCTAGCGGTGCTGGCTGTTATCAGTGCGGTGATGTGGGCCATTTAGCCAGAGATTGCAACCGGGCCAATAATGCCGGTGGCCCTTGTTTTAAATGTGGTGAAGTTGGGCATTTGGCTAAGGACTGTTCACTTGGAAATAATGGCGGCGGGGCCTGCTTTAGGTGTCATGAATATGGGCACATGGCGAGGGACTGCATCAGGGGAAGCGGTGGGGGCGGGGGAGGTTGCTTCACATGTGGTGAAGTGGGTCACTTGGCCAGGGAGTGCAGCAAAGACAGCGGAAGGCATGGCGGCGGAGGTGGCGTTGGCGGCACCAGAGGAAACACATGCTTTAATTGTGGGAGGCGTGGTCATTTTGCGCGAGAGTGCCCCGAAGCCTCTGCATGA 705 0.5376 MAEERSTGVVQWFSYSKGFGFIKPDDGGEDLFVHQSSIRSEGCSLVEGDRVEFVIASGDNDKTKAIDVTGPNGAPLQYKKDNYFGRDGGYGFSGAWRGVVRRNSGGASGAGCYQCGDVGHLARDCNRANNAGGPCFKCGEVGHLAKDCSLGNNGGGACFRCHEYGHMARDCIRGSGGGGGGCFTCGEVGHLARECSKDSGRHGGGGGVGGTRGNTCFNCGRRGHFARECPEASA 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0076 234 SUPERFAMILY Retrovirus zinc finger-like domains 104 150 IPR036875 GO:0003676|GO:0008270
Lele49g0076 234 Gene3D - 100 129 - -
Lele49g0076 234 ProSiteProfiles Zinc finger CCHC-type profile. 135 148 IPR001878 GO:0003676|GO:0008270
Lele49g0076 234 SMART csp_8 7 71 IPR011129 GO:0003676
Lele49g0076 234 ProSiteProfiles Zinc finger CCHC-type profile. 182 197 IPR001878 GO:0003676|GO:0008270
Lele49g0076 234 ProSiteProfiles Zinc finger CCHC-type profile. 158 171 IPR001878 GO:0003676|GO:0008270
Lele49g0076 234 SUPERFAMILY Retrovirus zinc finger-like domains 153 198 IPR036875 GO:0003676|GO:0008270
Lele49g0076 234 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Lele49g0076 234 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Lele49g0076 234 PRINTS Cold shock protein signature 43 61 IPR002059 GO:0003676
Lele49g0076 234 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Lele49g0076 234 ProSiteProfiles Zinc finger CCHC-type profile. 112 125 IPR001878 GO:0003676|GO:0008270
Lele49g0076 234 Gene3D - 177 203 - -
Lele49g0076 234 Gene3D - 210 234 - -
Lele49g0076 234 Gene3D - 154 176 - -
Lele49g0076 234 Gene3D - 130 153 - -
Lele49g0076 234 SUPERFAMILY Nucleic acid-binding proteins 4 73 IPR012340 -
Lele49g0076 234 PANTHER COLD SHOCK DOMAIN PROTEIN 2 175 231 - -
Lele49g0076 234 SUPERFAMILY Retrovirus zinc finger-like domains 198 231 IPR036875 GO:0003676|GO:0008270
Lele49g0076 234 SMART c2hcfinal6 157 173 IPR001878 GO:0003676|GO:0008270
Lele49g0076 234 SMART c2hcfinal6 181 197 IPR001878 GO:0003676|GO:0008270
Lele49g0076 234 SMART c2hcfinal6 134 150 IPR001878 GO:0003676|GO:0008270
Lele49g0076 234 SMART c2hcfinal6 111 127 IPR001878 GO:0003676|GO:0008270
Lele49g0076 234 SMART c2hcfinal6 215 231 IPR001878 GO:0003676|GO:0008270
Lele49g0076 234 Pfam Zinc knuckle 214 231 IPR001878 GO:0003676|GO:0008270
Lele49g0076 234 Pfam Zinc knuckle 111 125 IPR001878 GO:0003676|GO:0008270
Lele49g0076 234 Pfam Zinc knuckle 157 171 IPR001878 GO:0003676|GO:0008270
Lele49g0076 234 Pfam Zinc knuckle 134 149 IPR001878 GO:0003676|GO:0008270
Lele49g0076 234 Pfam Zinc knuckle 181 197 IPR001878 GO:0003676|GO:0008270
Lele49g0076 234 Pfam 'Cold-shock' DNA-binding domain 7 70 IPR002059 GO:0003676
Lele49g0076 234 Gene3D - 1 83 IPR012340 -
Lele49g0076 234 CDD CSP_CDS 7 70 IPR002059 GO:0003676
Lele49g0076 234 ProSiteProfiles Cold-shock (CSD) domain profile. 5 70 IPR002059 GO:0003676
Lele49g0076 234 ProSiteProfiles Zinc finger CCHC-type profile. 216 231 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0076 Lele-ChrLele49 469605 470309 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Lele49g0076 CSD 1.8e-21 CL0021