Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0071 ATGGCACCTAAACAAGATATAGAGGAAATTTCTTCTCAGAATTCTGTCTATTCACCATCTTCAACCTCACCAATGGGTAGCAGATTCAGACTTGTGTTTGATAGATTATGGGCTTTTGCCTCTTCTTTGAAGACAAGCAGCACACCACGTGGTCGACGAATTTTCCACAGAGATGTCGAAAAAGAAGAATTCCAGTATGCCAGTACTCAATGCCTCTCATCCTACTACAGTGTCTTCGTGGTTCGCCTGGCAATCATGGCCATGCTAGCCATCTTGATTGGGCTGCTCACTATATTAACATGGCATTTCACCAAGAGTTATACGGCAAAATCGCTTGATAACTTGGCATATGGGCTTCGTTATGAATTACTACAACGCCCCATCTTAAGGATGTGGAATATTTTGAATTCTACTGCTGAAATTACAAAAGCTCAGGTTGAGCTGTCTGAGTATGTCATCAGACGATACAGCAACCCTGCCAATCAAGCAGAACAAGTTGAGCTGTACGAAGCTATGAGGTCTGTAACCTGGGCCCTCTTCTCTAGCAGCAAAGCACTCAATTCAATAACTATCAATTACAGGAACGGCTTTGTTCAGGCATTCCACAGAGATCTTAAGGATAACAATACATTTTACATCTACTCTGATCTTGCAAACTACTCCATAGGTGCCAATGAGATGAAATCACTCTCAACACATCAAGCTTGGAATGATCAAGCCATTCGTGGTAACAGTTCTGCAACTTGGTATCGTGAACCACTTGACCCTCTTAGTGGTGTGAAGATTGGAAAAGCTAAGAAGATTGCGCCAGAAGACTTGATTAATATTGCTGGCATTTCTCAAGTCCCTGATGGGGCAGCTTCATGGCATGTTGCTGTGAGCAAGTTCACGGATTCACCATTACTTTCTGCTGCGCTTCCAGTTTGGGACTCTTCTAATAAGAGCATTGTGGCAGTTGTGGGTGTCACAACCGCACTTTATAGTGTTGGCCAGCTAATGAAAGAACTAGTTGAATTTCATAGTGGTTATATCTATTTGACCTCCCTGGAGGGTTACTTACTTGCCACTTCCACAAATGCTCCACTGCTAACAAATTCAAAGCCTCTCAAGCTTAAGATGGCTGTTGATTGTGAAGATGATGTAATACGATTGGGAGCCCAGTGGCTGAATAGAACCTACGGGAAGAATTTTCCTCCAAGTCATGGGGTTCACGTAGAGAATGTCAAGCTAGGCCATCAGCAATATTACATCGACTCATTCTTTTTAAATTTGAAGAGGCTTCCTCTGGTGGGTGTTATCATTATTCCAAGAAAGTATATTATGGGGAAGGTTGATCAAAGAGCCTTCAAAACATTGGTTATTCTGATATCTGCATCGTTGTGTATTCTAGTCATTGGATGCGTTTGCATTCTAATTCTGACAAATGGGGTATCCAAGGAAATGAAACTAAGAGCGGAACTAATCAGTCATCTGGAAGCAAGAAGGAAGGCAGAGGCATCAAGCAATTATAAAAGTCAGTTTCTTGCAAACATGAGTCATGAATTGAGGACACCTATGGCAGCAGTGATTGGGTTGCTTGACATTCTTATATCTGATGATTGCCTAACAAATGAACAATATGCAACAGTTACTCAGATAAGAAAATGCTCAACTGCTTTACTCCGTCTTCTTAACAACATATTGGATATCAGCAAGGTGGAATCCGGAAAATTTGTGTTGGAAAATGCAGAATTTGACTTGGGACGGGAACTTGAAGGGCTTGTAGATATGTTTTCTGTGCAGTGCATAAACCACAACGTAGAGACTGTTTTGGACCTATCAGATGATATGCCAAAGGTAGTTCAGGGCGATTCTGCTAGAGTTGTTCAAATTTTTGCAAACTTGATCAACAATTCAATTAAGTTCACTCCATCTGGTCACATTATTCTTCGAGGATGGTGCGAGAATCCCAATTGTTCCAGTGATAGCCAAAATCTTCCTCTTAATCAGAAGTCCCGGGCTCCACAAAAGACCAGAATGAAGCAACAAGGAAACCATGCAAAGAAGGCATCCAAAAAAGACAACCAAATAATTCTTTGGTTTGAAGTAGATGACACAGGCTGTGGTATTGATCCCAGTAAATGGGATTCTGTGTTTGAAAGCTTTGAGCAAGCAGATCCATCAACCACTAGATTGCATGGTGGCACCGGTCTTGGACTTTGCATTGTGAGAACCTTGGTCAATAAGATGGGTGGAGAAATCAAGGTAGTAAAAAAGGAAGGCCCAGGAACCCTGATGCGTTTGTACCTGCTTCTCAGTACACCCATGGATGCCACAGAACAACATTGTCAAATAGATTATGAGGAGAATGGCTTAGTGGTATTGCTTGCACTACATGGAGACACGGGTCGATCTATCACATCTAAATGGTTACAGAAAAATGGGGCTTGCACTCTAGAGGCGTCTGAATGGAATGAACTGACGCAAATTCTGAGGGAACTCTTCCATTCAAGTTCAGTCCACCACAATGGCTTTGATGCACATTATGCAGTAAGTAAGAGTTGGAAGTCCAAATTACTCAGCATAGAAGAGATGAGGAACCCAACATTTGTGATTATAGTGGACATAGGGCTGCTTGATTTAAGCACAGATATATGGAAGGAACAGCTCAACTTCCTTCACAAGTACTTTGGCAGAGCAAAGTTCGCATGGGTGCTAAATCATGACACCTCTAATACTATAAAGATGGTGCTTCGCAGGAAGGGGCATATATTGATGGTCAACAAGCCCCTCTACAAGACCAAAATGTTTCATATTCTGGAAGCTGTCATAAAGGAGAGAAATCTTGAGCTGCAAAAGAAAAATATGACTGCCTCAAGAACCACGACGAAAGAGGGTGATGGGCACGAGTTTCTGGAGATTGATTCTACTCATTTTGATAGTGCTAGCTCTGATGGTTCTGACATATCCGAAACGGGTGCTTCTAATAGTGCCAGTGGAGAAAAACGAAGGGAAAATATTGTAAAATCCCATCCACCATCAGAGTACAACAAAAACAACTGCCTCGTTGGATTAACCGATGAATACGCAGAAGATAACATTTCAAGGAAAGAAGAATCATGTCAGAGTAGCCCCAACTGCCGTGACAGCCTTGAAGGCACAGAACCAAGAGTACAAGCATCCTTTCCAACGGAAGCTGAAGAAAAAGATTCTGGTTCTAGGAAAACATTTGGTGTCACTTGCTCAAGTAAAACTGTTAATGGAAAGAAATCTCTTGAAGGTCGGAGGATATTGCTCGCAGAAGACAATCCAGTACTTCAAAGAGTTGCAACCATAATGTTGGAAAAAATGGGAGCTACAGTAGTTGCAGTCGGAGATGGACAGCAGGCTGTGGATGCTCTGAATTGCATGCTCGGCGCTGAAGATAACAGAAGGGAGTCTCTATTGAAGGAGAGAAGCGCAATATCTCAAACAGAAATTATCAGCTGCACACCTTATGATTTGATCCTAATGGATTGTCAGATGCCAAAGATGGATGGTTATGAAGCGACGAAAGCAATAAGGAAATCAGAAGCAGGAACAGGATCGCACATTCCGATAGTTGCTCTTACGGCGCACGCAATGTCATGTGATGAGGCTAAGTGCCTGGAGGTGGGCATGGATGCTTATTTAACAAAGCCAATTGACTTCAAGCTGATGGTGTCCACCATTCTTTCACTCACTAAAACAACATCCTGA 3717 0.4229 MAPKQDIEEISSQNSVYSPSSTSPMGSRFRLVFDRLWAFASSLKTSSTPRGRRIFHRDVEKEEFQYASTQCLSSYYSVFVVRLAIMAMLAILIGLLTILTWHFTKSYTAKSLDNLAYGLRYELLQRPILRMWNILNSTAEITKAQVELSEYVIRRYSNPANQAEQVELYEAMRSVTWALFSSSKALNSITINYRNGFVQAFHRDLKDNNTFYIYSDLANYSIGANEMKSLSTHQAWNDQAIRGNSSATWYREPLDPLSGVKIGKAKKIAPEDLINIAGISQVPDGAASWHVAVSKFTDSPLLSAALPVWDSSNKSIVAVVGVTTALYSVGQLMKELVEFHSGYIYLTSLEGYLLATSTNAPLLTNSKPLKLKMAVDCEDDVIRLGAQWLNRTYGKNFPPSHGVHVENVKLGHQQYYIDSFFLNLKRLPLVGVIIIPRKYIMGKVDQRAFKTLVILISASLCILVIGCVCILILTNGVSKEMKLRAELISHLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYATVTQIRKCSTALLRLLNNILDISKVESGKFVLENAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKVVQGDSARVVQIFANLINNSIKFTPSGHIILRGWCENPNCSSDSQNLPLNQKSRAPQKTRMKQQGNHAKKASKKDNQIILWFEVDDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRTLVNKMGGEIKVVKKEGPGTLMRLYLLLSTPMDATEQHCQIDYEENGLVVLLALHGDTGRSITSKWLQKNGACTLEASEWNELTQILRELFHSSSVHHNGFDAHYAVSKSWKSKLLSIEEMRNPTFVIIVDIGLLDLSTDIWKEQLNFLHKYFGRAKFAWVLNHDTSNTIKMVLRRKGHILMVNKPLYKTKMFHILEAVIKERNLELQKKNMTASRTTTKEGDGHEFLEIDSTHFDSASSDGSDISETGASNSASGEKRRENIVKSHPPSEYNKNNCLVGLTDEYAEDNISRKEESCQSSPNCRDSLEGTEPRVQASFPTEAEEKDSGSRKTFGVTCSSKTVNGKKSLEGRRILLAEDNPVLQRVATIMLEKMGATVVAVGDGQQAVDALNCMLGAEDNRRESLLKERSAISQTEIISCTPYDLILMDCQMPKMDGYEATKAIRKSEAGTGSHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKLMVSTILSLTKTTS 1238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0071 1238 Pfam His Kinase A (phospho-acceptor) domain 504 569 IPR003661 GO:0000155|GO:0007165
Lele49g0071 1238 SUPERFAMILY CheY-like 1086 1234 IPR011006 -
Lele49g0071 1238 PANTHER TWO-COMPONENT HISTIDINE KINASE 64 775 - -
Lele49g0071 1238 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 616 765 IPR003594 -
Lele49g0071 1238 PRINTS Bacterial sensor protein C-terminal signature 710 720 IPR004358 GO:0016310|GO:0016772
Lele49g0071 1238 PRINTS Bacterial sensor protein C-terminal signature 727 745 IPR004358 GO:0016310|GO:0016772
Lele49g0071 1238 PRINTS Bacterial sensor protein C-terminal signature 692 706 IPR004358 GO:0016310|GO:0016772
Lele49g0071 1238 Gene3D - 568 768 IPR036890 -
Lele49g0071 1238 MobiDBLite consensus disorder prediction 972 1013 - -
Lele49g0071 1238 MobiDBLite consensus disorder prediction 1027 1070 - -
Lele49g0071 1238 MobiDBLite consensus disorder prediction 1 24 - -
Lele49g0071 1238 MobiDBLite consensus disorder prediction 655 684 - -
Lele49g0071 1238 MobiDBLite consensus disorder prediction 7 24 - -
Lele49g0071 1238 ProSiteProfiles Histidine kinase domain profile. 510 767 IPR005467 -
Lele49g0071 1238 Gene3D - 1072 1236 - -
Lele49g0071 1238 MobiDBLite consensus disorder prediction 655 674 - -
Lele49g0071 1238 CDD HisKA 504 565 IPR003661 GO:0000155|GO:0007165
Lele49g0071 1238 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 558 763 IPR036890 -
Lele49g0071 1238 SMART HKATPase_4 616 767 IPR003594 -
Lele49g0071 1238 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 490 570 IPR036097 GO:0000155|GO:0007165
Lele49g0071 1238 CDD REC_hyHK_CKI1_RcsC-like 1090 1230 - -
Lele49g0071 1238 MobiDBLite consensus disorder prediction 972 994 - -
Lele49g0071 1238 ProSiteProfiles Response regulatory domain profile. 1089 1234 IPR001789 GO:0000160
Lele49g0071 1238 Pfam Response regulator receiver domain 1090 1229 IPR001789 GO:0000160
Lele49g0071 1238 FunFam Histidine kinase 1-like protein 491 570 - -
Lele49g0071 1238 SMART REC_2 1088 1230 IPR001789 GO:0000160
Lele49g0071 1238 SMART HisKA_10 503 569 IPR003661 GO:0000155|GO:0007165
Lele49g0071 1238 Gene3D - 472 567 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0071 Lele-ChrLele49 428648 434652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0071 23 1238 Histidine Kinase Gene Family AT2G17820 65.341 0.0 1580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele49g0071 HATPase_c 3.8e-22 CL0025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele54g0546 54 11916723 11920617 Lele49g0071 49 428648 434652 CCT
Lele56g0888 56 7465705 7478449 Lele49g0071 49 428648 434652 CCT
Lele49g0071 49 428648 434652 Lele49g0071 49 428648 434652 ECH
Lele49g0071 49 428648 434652 Lele51g0079 51 459987 465975 hybridization
Lele49g0071 49 428648 434652 Lele52g0080 52 493518 500194 hybridization