Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0050 ATGACATGTGTGCCTGGTGTGTCTTTAGAGCTGAGTTCTCAATTCCTAAGATTTCTTGACTTCCTGATGGATTTTGTGGCGAATCCTTTTCCCGTGCCTTCTTCCCTGTTGGGCCTCTTCGGGAGCTTCATTGAGAGGGTTAGATACATGAGCAGCCTCGCGGTTTCTGTTATAATTGGAAACATCTTCTCTGCGATCTTCACATTTTGCTTTGCCTTAGTGGGAACATTATTGGGTGCCATGACAGGAGCTTTGATAGGCCAAGAGACTGAGAGTGGCTTCATTAGAGGAGCAGCAGTTGGTGCCATATCCGGAGCTGTTTTCTCCATTGAAGTATTTGAATCTTCTCTTGTTCTCTGGCAATCTGATGAATCTGGGATTGGGTGTCTCTTATATCTGATTGATGTCATTGCTAGCCTACTGAGTGGGAGACTTGTGCGTGAGAGGATTGGCCCTGCCATGTTAAGTGCAGTCCAAAGTCAGATGGGTGCTGTTGAAACAAACTTTGAGGAGGTTCAAAACATCTTTGACACCGGTGGTTGCAAGGGTTTAACAGGAGATTATGTTGAAAAGATCCCAAAGATCACAATCACAAATGATAATAATATTGATGCTTGGGGTGAAAGAGTTTCTTGTTCAGTCTGCCTCCAGGACTTCCAGGCTGGAGAGACAGTTAGAAGTTTGCCTCATTGCCATCACATGTTCCACCTACCATGCATAGATAAGTGGCTCTTCAGGCACGGTTCATGTCCGTTATGCAGAAGGGACCTGTAA 774 0.4522 MTCVPGVSLELSSQFLRFLDFLMDFVANPFPVPSSLLGLFGSFIERVRYMSSLAVSVIIGNIFSAIFTFCFALVGTLLGAMTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVETNFEEVQNIFDTGGCKGLTGDYVEKIPKITITNDNNIDAWGERVSCSVCLQDFQAGETVRSLPHCHHMFHLPCIDKWLFRHGSCPLCRRDL 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0050 257 FunFam NEP1-interacting protein-like 1 172 257 - -
Lele49g0050 257 CDD RING-H2_PA-TM-RING 212 254 - -
Lele49g0050 257 Pfam Ring finger domain 211 254 IPR001841 -
Lele49g0050 257 ProSiteProfiles Zinc finger RING-type profile. 212 254 IPR001841 -
Lele49g0050 257 SUPERFAMILY RING/U-box 211 257 - -
Lele49g0050 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 257 IPR013083 -
Lele49g0050 257 SMART ring_2 212 253 IPR001841 -
Lele49g0050 257 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 45 256 IPR044523 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0050 Lele-ChrLele49 333196 336548 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0050 42 257 C3H Transcription Factor Family AT5G66070 77.778 1.26e-118 336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0050 49 333196 336548 Lele51g0056 51 341663 343175 hybridization
Lele49g0050 49 333196 336548 Lele52g0058 52 382878 384414 hybridization