Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0049 ATGAGTAGAGCATATCCCCTTTCTCTCGCATTGTATCGCCTACTCTACATTTGTTCTCTCTTCCTCCGTCTTTCTCCCTCTCACAAGAAGCGGGCCACATCTAGAAATCCTTTCGACAACATATTGAAAACTCTCGAGAAGCCTGGAGGCGGTCATTTCGGCAAGTACTATAGTCTGCCGGCTCTCAACGATCGTAGAATCGATAAGCTTCCTTACTCTATTAGGATACTTCTGGAATCCGCGATTCGCAACTGCGATGAGTTTCAAGTTAAGAGAAATGATGTTGAAAAAATTATTGATTGGGAGAACACCTCTCCTAAACTGGTAGAAATTCCTTTCAAGCCTGCAAGAGTGCTTCTGCAGGATTTTACTGGGGTGCCTGCTGTTGTTGATCTCGCTTGCATGCGAGATGCAATGACCAAGCTAGGTGGTGATTCTAATAAAATTAATCCCTTGGTTCCAGTTGATCTTGTCATAGATCACTCAGTTCAGGTAGATGTGGCAAGATCAGAAAATGCTGTGCAGACAAACATGGAACTTGAATTCAAGAGGAATAAGGAAAGATTTGGTTTCCTCAAATGGGGTTCAAAAGCATTCAATAACATGCTTGTTGTTCCTCCTGGATCAGGGATAGTTCACCAGGTTAATTTAGAATATCTTGGCAGAGTTGTGTTCAATACAGATGGTATGCTTTACCCTGATAGTGTAGTCGGGACTGACTCACATACAACTATGATAGATGGCTTGGGTGTTGCTGGGTGGGGAGTTGGTGGAATCGAAGCAGAAGCTGCAATGCTTGGCCAGCCAATGAGCATGGTTCTACCCCGTGTGGTTGGGTTTAAATTATTAGGCAAACTAAGAGATGGCGTGACAGCTACTGACTTGGTATTGACAGTTACACAAATGCTAAGAAATCACGGGGTTGTTGGCAAGTTCGTTGAGTTCTATGGGGAAGGCATGAGTGAACTGTCTTTGGCAGATCGTGCCACCATTGCAAACATGTCTCCTGAGTATGGTGCAACAATGGGCTTCTTTCCTGTAGATCATGTCACTTTACAATACTTGAAACTGACTGGCAGAAGTGATGAGACTGTTTCTATGATAGAGTCGTATTTACGAGCTAATAAGATGTTTGTGGACTACAATGAGCCCCAGGCTGAGAGAGTCTACTCTTCATATATAGAGCTCAATCTCGAGGACGTGGAGCCCTGTGTATCAGGCCCAAAGAGGCCCCATGATCGAGTCTCTTTGAAAGAAATGAAGGCAGATTGGCATTCTTGCCTTGACAATAAAGTTGGGTTTAAGGGTTTTGCTGTACCAAAGGAATCTCAGAATAAGGTTGCAGGCTTCACTTTCCACGGGGAACCAGCACAGCTTAGGCATGGGGATGTTGTTATTGCTGCTATCACCAGCTGTACAAATACGTCAAATCCCAGTGTAATGCTTGGAGCTGCACTGGTTGCAAAGAAAGCTTGTGAATTAGGATTGAAGGTTAAGCCATGGATTAAGACCAGTCTTGCTCCAGGTTCTGGTGTTGTGACAAAGTATTTGCAAAAGAGTGGCCTGCAGAAGTATTTGAATCAGCTCGGGTTTCATATTGTTGGGTATGGATGTACCACCTGCATTGGTAATTCAGGGGATATTGATGAAGCTGTTGCATCTGCTATTACCGAAAATGATATAGTAGCTGCAGCTGTATTGTCTGGAAATAGAAATTTTGAGGGACGAGTTCATCCATTAACAAGGGCTAATTATCTTGCTTCTCCTCCTCTCGTTGTTGCCTATGCCCTTGCTGGCACGGTGGACATTGACTTTGACACTGAACCCATTGGGTTGGTTAATGAGGGAAGGAAGATCTTCTTCAAGGATATTTGGCCTACCAGTGAAGAAATAGCAGATGCTGTACAATTAAGCGTGCTTCCTGATATGTTTAGGGCTACATATGAAGCAATCACCCAAGGAAATCCCATGTGGAATCAGTTATCTGTACCTTCTGGCACTCTCTATGCATGGGACCCTACCTCAACTTATATTCATGAACCTCCTTATTTTCACGATATGAGCATGTCTTCCCCAGGTCCTCATGGGGTAAAGGATGCTTACTGTTTGCTCAACTGTGGAGACAGCATTACAACTGACCACATCTCCCCGGCTGGTAGCATCCACAAGGATAGTCCCGCAGCCAGATACCTCATGGAACGTGGGGTTGATAGACGAGATTTCAACTCCTATGGAAGTCGTCGTGGTAATGATGAGGTGATGGCACGGGGCACTTTTGCTAATATTCGCCTCGTTAACAAGCTATTGAATGGAGAAGTTGGACCTAAAACTATTCATATTCCTTCTGGGGAGAAGCTATCCGTTTTTGATGCTGCAATGAAATACAAGAGTGAGGGGCATGAGACAATCGTTTTGGCTGGAGCCGAGTATGGAAGTGGAAGTTCTCGTGATTGGGCTGCAAAAGGACCATTGTTATTGGGTGTGAAAGCTGTCATAGCAAAAAGCTTCGAAAGGATTCACCGAAGTAATTTGGTAGGAATGGGTGTCATTCCGCTATGTTTTAAGGCTGGGGAAGATGCTGAGACTCGGGGGTTGACTGGCCACGAACGTTACACCATTAAACTTCCTAGCAGAGTGGACGAAATACGACCCGGTCAAGACGTCACAGTCTTGACTGATAATGGGAAGTCATTTACATGTACCCTGAGATTTGATACAGAGGTTGAACTTGCTTACTTTAATCATGGAGGAATCTTGCAATATGTGATCAGAAACTTGATAAATGCTAAACAATAA 2796 0.4417 MSRAYPLSLALYRLLYICSLFLRLSPSHKKRATSRNPFDNILKTLEKPGGGHFGKYYSLPALNDRRIDKLPYSIRILLESAIRNCDEFQVKRNDVEKIIDWENTSPKLVEIPFKPARVLLQDFTGVPAVVDLACMRDAMTKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQTNMELEFKRNKERFGFLKWGSKAFNNMLVVPPGSGIVHQVNLEYLGRVVFNTDGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPRVVGFKLLGKLRDGVTATDLVLTVTQMLRNHGVVGKFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIESYLRANKMFVDYNEPQAERVYSSYIELNLEDVEPCVSGPKRPHDRVSLKEMKADWHSCLDNKVGFKGFAVPKESQNKVAGFTFHGEPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLKVKPWIKTSLAPGSGVVTKYLQKSGLQKYLNQLGFHIVGYGCTTCIGNSGDIDEAVASAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDTEPIGLVNEGRKIFFKDIWPTSEEIADAVQLSVLPDMFRATYEAITQGNPMWNQLSVPSGTLYAWDPTSTYIHEPPYFHDMSMSSPGPHGVKDAYCLLNCGDSITTDHISPAGSIHKDSPAARYLMERGVDRRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTIHIPSGEKLSVFDAAMKYKSEGHETIVLAGAEYGSGSSRDWAAKGPLLLGVKAVIAKSFERIHRSNLVGMGVIPLCFKAGEDAETRGLTGHERYTIKLPSRVDEIRPGQDVTVLTDNGKSFTCTLRFDTEVELAYFNHGGILQYVIRNLINAKQ 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0049 931 FunFam cytoplasmic aconitate hydratase 404 627 - -
Lele49g0049 931 Gene3D Aconitase, domain 3 404 627 IPR015931 -
Lele49g0049 931 TIGRFAM aconitase_1: aconitate hydratase 1 54 927 IPR006249 -
Lele49g0049 931 PANTHER ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER 30 926 IPR006249 -
Lele49g0049 931 ProSitePatterns Aconitase family signature 1. 464 480 IPR018136 -
Lele49g0049 931 SUPERFAMILY Aconitase iron-sulfur domain 45 664 IPR036008 -
Lele49g0049 931 CDD AcnA_IRP 117 601 - -
Lele49g0049 931 FunFam Aconitate hydratase 36 403 - -
Lele49g0049 931 Pfam Aconitase family (aconitate hydratase) 96 599 IPR001030 -
Lele49g0049 931 ProSitePatterns Aconitase family signature 2. 530 543 IPR018136 -
Lele49g0049 931 Gene3D Aconitase, domain 4 692 928 IPR015928 -
Lele49g0049 931 Gene3D Aconitase, domain 3 35 403 IPR015931 -
Lele49g0049 931 PRINTS Aconitase family signature 231 244 IPR001030 -
Lele49g0049 931 PRINTS Aconitase family signature 178 191 IPR001030 -
Lele49g0049 931 PRINTS Aconitase family signature 202 210 IPR001030 -
Lele49g0049 931 PRINTS Aconitase family signature 468 479 IPR001030 -
Lele49g0049 931 PRINTS Aconitase family signature 403 417 IPR001030 -
Lele49g0049 931 PRINTS Aconitase family signature 245 260 IPR001030 -
Lele49g0049 931 PRINTS Aconitase family signature 307 320 IPR001030 -
Lele49g0049 931 PRINTS Aconitase family signature 321 334 IPR001030 -
Lele49g0049 931 PRINTS Aconitase family signature 530 543 IPR001030 -
Lele49g0049 931 CDD AcnA_IRP_Swivel 707 875 IPR044137 -
Lele49g0049 931 FunFam Aconitate hydratase 692 928 - -
Lele49g0049 931 SUPERFAMILY LeuD/IlvD-like 668 926 - -
Lele49g0049 931 Pfam Aconitase C-terminal domain 728 856 IPR000573 -
Lele49g0049 931 Gene3D - 628 689 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0049 Lele-ChrLele49 319049 325208 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0049 49 319049 325208 Lele53g1285 53 21326173 21328646 CCT
Lele49g0049 49 319049 325208 Lele54g1257 54 17919882 17922306 CCT
Lele49g0049 49 319049 325208 Lele51g0055 51 324178 330356 hybridization
Lele49g0049 49 319049 325208 Lele52g0057 52 365255 371800 hybridization