Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0045 ATGGCGGATTCTCCTCTCAGAAGGACTTCAAGGTCTCCGTCCCCCTGGAGAGCCCAGTCTAGATCGAGATCCAGGTCAAAGACTCCGCCCAGGGCTAGGTCAAGGTCTCGTTCTAGATCAAGATCCAGGTCAAGACACAGGCGCAGGTCCCTTTCAAGAAGCCGGGGCAGATCAAGGTCAAGAAGTCATGGAAGGCCTGAATCTTTAAATCCTGGGAATACTCTCTATGTTACTGGTCTATCTTCAAGGGTTACTGAGAGGGGCCTAGAAGAACACTTTTCTAAGGAAGGAAAGGTTGCTTCATGTTTCCTTGTGGTGGAGCCTCGTACTCGTATTTCCCGCGGTTTTGCTTTTGTTACTATGGATACTGTTGAAGATGCTAACCGCTGTATAAAGTATCTTAATCAATCTGTACTTGAAGGTCGCTATATTACAGTTGAACAGTCGCGGAGGAAAAGGGCAAGAACTCCTACGCCAGGGCACTATCTTGGTCTCAAAAGCACTAGAGACTATGGTTATCGTGGTGATCGTGGAAGGTACCGTGGTGAGTCAGGTCGTGATGACTATGCTTATCGTAGGTCTCCAAGGCGCTCACCATACCGAGGTGGTCGGGATTCGTCTCCGCGGCACTCACCCTATGGTGGAAGATCTCGGAGGGACAGATCAAGGTCCCACCCTTATTCTCCTTATGGCAGTCCAGAGAGGAAGTATGCTCGGGGTTCTAGGTGA 729 0.4993 MADSPLRRTSRSPSPWRAQSRSRSRSKTPPRARSRSRSRSRSRSRHRRRSLSRSRGRSRSRSHGRPESLNPGNTLYVTGLSSRVTERGLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDTVEDANRCIKYLNQSVLEGRYITVEQSRRKRARTPTPGHYLGLKSTRDYGYRGDRGRYRGESGRDDYAYRRSPRRSPYRGGRDSSPRHSPYGGRSRRDRSRSHPYSPYGSPERKYARGSR 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0045 242 SMART rrm1_1 74 147 IPR000504 GO:0003723
Lele49g0045 242 MobiDBLite consensus disorder prediction 24 60 - -
Lele49g0045 242 SUPERFAMILY RNA-binding domain, RBD 66 180 IPR035979 GO:0003676
Lele49g0045 242 MobiDBLite consensus disorder prediction 170 204 - -
Lele49g0045 242 MobiDBLite consensus disorder prediction 1 23 - -
Lele49g0045 242 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 60 228 - -
Lele49g0045 242 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 3 157 - -
Lele49g0045 242 CDD RRM_RBMX_like 72 151 - -
Lele49g0045 242 Gene3D - 13 157 IPR012677 -
Lele49g0045 242 MobiDBLite consensus disorder prediction 1 76 - -
Lele49g0045 242 MobiDBLite consensus disorder prediction 211 225 - -
Lele49g0045 242 MobiDBLite consensus disorder prediction 148 242 - -
Lele49g0045 242 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 144 IPR000504 GO:0003723
Lele49g0045 242 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 151 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0045 Lele-ChrLele49 294463 297258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0045 72 158 Eukaryotic Initiation Factors Gene Family AT1G49760 32.184 6.22e-07 48.1