Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0029 ATGGGTGCCCGACAAATTATCAGCATTCTTTTGTGTGTGGTAGATGGGAAAACAGTTGGGGAGGGGGGCATTTTGAAATTTGGCTCGTTGATCTTGGAACTTCGTCCGGAAAACAATCAGAGATTTGCTGCTCAGATTGCTAGCACGCAACAATCTCACGCTGAGGAACATAAGAAGCCAAATACGTCAATTCCAAACGGTAATGAATTTGGAGATGTCATATTCGTAGACGATGAACACAAGTCACCATCAGATCAGCCCGTGCCTATGTCATTAGAGCAAACAGAACCAACACATGATAAAGTGAATCAGATGGAAGAAGTTGAGATGGAAGATATAATTGAAGAGTCTATTGTGGACATCGATTCTGTTGATGCCAATAATCATCTTGCTGTGGTAGATTATGTTGAAGAACTTCATGACTACTACAGAAAGATGGAGAGTATTAGCTGTGTTACTCCGAATTATATGGCACAGCAAGATGACATTAATGAAAGGATGAGGGCTATACTGATTGACTGGCTTATTGAGGTTCACGATAAATTTGACCTCATGCATGGGACTTTGTTCCTTACCGTTAATCTCATAGATAGGTTTTTGGCAAAACAAAAAGTGATGAGAAAGAAACTCCAGCTGGTTGGCTTGGTTGCGATGCTTTTGGCATGCAAGTATGAGGAAGTCTCTGTGCCCGTAGTAGGGGATCTGATCCTTATATCAGACAAAGCTTACACAAGGAAGGAAGTTCTAGAAATGGAGAAGTTGATTCTCAACACATTGCAGTTTAACGTGTCAGTTCCAACACCATATGTTTTTATGAGGAGGTTCCTGAAGGCAGCTGAAGCAGATAAGAAAGAATCCATAGAAGAATCTAATAATGAACACTTCAATTCGATATTGCAATTTGTAATAATTGGCATTGTAATAGATGGTAACTCGTACTGGAATTTTCTCTCCATGAAACAGCTTGAGCTAGCAGCTTTCTTCTTGATGGATCTATCTCTCGTGGAATATGAGATGTTGAACTTCCCACCATCAATGCTAGCTGCAGCTGCAGTTTATGCAGCTCAATGTACTACCGATTGCTCAAGGATGATGGTTGAGTTCCACCAGAAGGCGGGGACGGGGAAGCTTACAGGGGCATATAGGAAGTACTGCTCATCCAAGTTCAGCTCCATTGCAGAATGTGATCCGGCAAGTTTTCTTCTGGAGAACCGGTTGTAG 1221 0.4177 MGARQIISILLCVVDGKTVGEGGILKFGSLILELRPENNQRFAAQIASTQQSHAEEHKKPNTSIPNGNEFGDVIFVDDEHKSPSDQPVPMSLEQTEPTHDKVNQMEEVEMEDIIEESIVDIDSVDANNHLAVVDYVEELHDYYRKMESISCVTPNYMAQQDDINERMRAILIDWLIEVHDKFDLMHGTLFLTVNLIDRFLAKQKVMRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISDKAYTRKEVLEMEKLILNTLQFNVSVPTPYVFMRRFLKAAEADKKESIEESNNEHFNSILQFVIIGIVIDGNSYWNFLSMKQLELAAFFLMDLSLVEYEMLNFPPSMLAAAAVYAAQCTTDCSRMMVEFHQKAGTGKLTGAYRKYCSSKFSSIAECDPASFLLENRL 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0029 406 CDD CYCLIN 167 256 IPR013763 -
Lele49g0029 406 PIRSF Cyclin_A_B_D_E 32 299 IPR039361 -
Lele49g0029 406 PIRSF Cyclin_A_B_D_E 358 406 IPR039361 -
Lele49g0029 406 PIRSF Cyclin_A_B_D_E 311 362 IPR039361 -
Lele49g0029 406 SMART cyclin_7 270 386 IPR013763 -
Lele49g0029 406 SMART cyclin_7 173 257 IPR013763 -
Lele49g0029 406 Pfam Cyclin, N-terminal domain 140 263 IPR006671 -
Lele49g0029 406 Pfam Cyclin, C-terminal domain 266 396 IPR004367 -
Lele49g0029 406 PANTHER CYCLINS 93 371 IPR039361 -
Lele49g0029 406 Gene3D - 259 404 - -
Lele49g0029 406 SUPERFAMILY Cyclin-like 127 263 IPR036915 -
Lele49g0029 406 MobiDBLite consensus disorder prediction 47 69 - -
Lele49g0029 406 FunFam G2/mitotic-specific cyclin 152 264 - -
Lele49g0029 406 Gene3D - 152 258 - -
Lele49g0029 406 ProSitePatterns Cyclins signature. 168 199 IPR006671 -
Lele49g0029 406 SMART Cyclin_C_2 266 398 IPR004367 -
Lele49g0029 406 SUPERFAMILY Cyclin-like 243 401 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0029 Lele-ChrLele49 200040 202694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0029 4 402 Core Cell Cycle Gene Families AT2G17620 50.935 3.36e-126 369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0029 49 200040 202694 Lele53g1249 53 21096988 21101468 CCT
Lele49g0029 49 200040 202694 Lele54g1222 54 17727771 17728237 CCT
Lele49g0029 49 200040 202694 Lele56g0225 56 1819773 1823218 CCT
Lele49g0029 49 200040 202694 Lele51g0031 51 214202 217297 hybridization
Lele49g0029 49 200040 202694 Lele52g0036 52 240140 243627 hybridization