Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0028 ATGCCCTTGCCAATAACCGTAGAGAGTGACACGCGCGGGACTAATGCGTGGATCTTAGTTTCCTGGAAAAACCAACATCTATTCTTTTCCGGTTGGGTGTGTGGCTTGAGAAGCCTCCCGTCTTTGGAAAGGAGCACCATGGGAGGTGACAGTGCCGTTGACGATGCCACCGCCACCCAGTCCATGGGCGGTGAGGGAGTGAATATAAACGTTCGATGCTCCAGTGGTTCGAAATTCTCGGTTCAGATTAGCCTCGAATCCACCGTCGGATTGTTCAAGGAGCTTGTTGCTCGGAATTGCGATATCCCCGCCAATCAACAGCGGCTGATTTACAAGGGCCGGATCTTAAAGGACGATCAAATTCTGCAAAGCTACGGTCTGGAGGCAGATCATACTGTCCATCTGGTTCGTGGCTTTGCCCCAGCTGCTGCAGCCAATTCAGCTGGTGGGACCAATACCAGTGCTACAAATACCACAACAAATAATGCAAGAGGTGCTGCTAGTGAAGGTGGGGGTCTTGGAGGTTCTGGCTTTGGGGATTCACTGTTTCCTGGACTAGGCGTCAATGGGCTTGGGGGAAGTGGCGTCAATGGCTTGTTTGGAGCAGGCCTTTTGGATCCTGAACAAATGCAGCAATCATTTATTTCTAATCCCAATATGATGAGAGAAATGATGAACACACCTGCTATACAGAATCTACTTAATAATCCTGAGATAATGCGGAGTTTTATTATGAGCAATCCACAATTACGAGAGCTTATGGACCGAAATCCTGAGCTAGCACACATACTTAATGATCCAGCCACTCTCCGTCAAACACTTGAAGCTACAAGAAACCCTGAGATCATGCGTGAAATGATGAGAAATACAGACCGAGCAATGAGCAACATTGAATCTTCTCCTGAGGGATTCAACATGCTGAGACGGATGTATGAAAATGTTCAAGAGCCATTCTTAGATGCTACAACAATGGCTGGTAATACAGGAAATGACAACTCCAACCCGTATGATGCACTTTTGGACACTCAAGGGGGACAAGCCAGGGATCGATCTACTAATCCTTCAACTACAAGTGCTGAAGCAACTGCTGGCTCTCCCTCCCCTAATACTAACCCACTTCCTAATCCTTGGACCTCTACTGGATCTGGAGGTGCTCAAAATAACACTGCAAGGACAACCACTGGTGGGGACACTAGGCAGCAGGCACCCGCTGGCTTAGGAGGTTTTGGTTTGCAGGATTATCAAGGTTTGCTGGGTTCTATGCCCGATCCTGCCTCATTGACCCAGTTAATGCAAAATCCAGCTATTTCACAAATGATGCAAAGTATCCTTTCCAACCCACAGGCTATGAACCAGATTCTTGGTGTCAATCCTGACCAACGTGGCTTACCAGATCTAAATTCTCATCTTAGAGAAATGATGCAAAATCCTGAGTTCCTTCGCTTGTTGTCTTCACCTGAGACAATGCAGCAACTCTTGTCTTTTCAGCAAACTCTTCTTTCGCAGCTTGGTCGGTCACCATCAACACAGGAATCAGGTCAGACTGGTGGAGGAGGCACTGGAACGATGAATAACTCAGGGTTGGAGATGTTGATGAACATGTTTGGTGGACTTGGGGCTGGTAGCCTTGCAGTTCCGAACAGATCAAATGAGCCACCGGAGCAAATGTATGCCACCCAGTTGTCACAGCTTCAAGAGATGGGCTTCTTTGATACGCAGGAGAACATTCGAGCGCTCATCGCCACTCAAGGGAATGTTCACGCAGCAGTTGAACGGCTTCTGGGCAACTCTGGCCAGTAG 1800 0.4806 MPLPITVESDTRGTNAWILVSWKNQHLFFSGWVCGLRSLPSLERSTMGGDSAVDDATATQSMGGEGVNINVRCSSGSKFSVQISLESTVGLFKELVARNCDIPANQQRLIYKGRILKDDQILQSYGLEADHTVHLVRGFAPAAAANSAGGTNTSATNTTTNNARGAASEGGGLGGSGFGDSLFPGLGVNGLGGSGVNGLFGAGLLDPEQMQQSFISNPNMMREMMNTPAIQNLLNNPEIMRSFIMSNPQLRELMDRNPELAHILNDPATLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLDATTMAGNTGNDNSNPYDALLDTQGGQARDRSTNPSTTSAEATAGSPSPNTNPLPNPWTSTGSGGAQNNTARTTTGGDTRQQAPAGLGGFGLQDYQGLLGSMPDPASLTQLMQNPAISQMMQSILSNPQAMNQILGVNPDQRGLPDLNSHLREMMQNPEFLRLLSSPETMQQLLSFQQTLLSQLGRSPSTQESGQTGGGGTGTMNNSGLEMLMNMFGGLGAGSLAVPNRSNEPPEQMYATQLSQLQEMGFFDTQENIRALIATQGNVHAAVERLLGNSGQ 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0028 599 MobiDBLite consensus disorder prediction 503 527 - -
Lele49g0028 599 Gene3D - 55 150 - -
Lele49g0028 599 SMART CBM 457 492 IPR006636 -
Lele49g0028 599 SMART CBM 197 234 IPR006636 -
Lele49g0028 599 SMART CBM 247 286 IPR006636 -
Lele49g0028 599 SMART CBM 415 453 IPR006636 -
Lele49g0028 599 Pfam UBA/TS-N domain 557 593 IPR015940 -
Lele49g0028 599 CDD UBA_PLICs 557 595 - -
Lele49g0028 599 Pfam Ubiquitin family 69 136 IPR000626 GO:0005515
Lele49g0028 599 MobiDBLite consensus disorder prediction 146 166 - -
Lele49g0028 599 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 551 596 IPR015940 -
Lele49g0028 599 ProSiteProfiles Ubiquitin domain profile. 67 136 IPR000626 GO:0005515
Lele49g0028 599 CDD Ubl_Dsk2p_like 67 139 - -
Lele49g0028 599 MobiDBLite consensus disorder prediction 323 400 - -
Lele49g0028 599 Gene3D - 242 300 - -
Lele49g0028 599 FunFam Ubiquitin domain-containing protein DSK2b 64 151 - -
Lele49g0028 599 SMART uba_6 557 595 IPR015940 -
Lele49g0028 599 FunFam Ubiquitin domain-containing protein DSK2b 244 300 - -
Lele49g0028 599 SUPERFAMILY Ubiquitin-like 57 154 IPR029071 -
Lele49g0028 599 FunFam Ubiquitin domain-containing protein DSK2b 540 598 - -
Lele49g0028 599 SMART ubq_7 67 138 IPR000626 GO:0005515
Lele49g0028 599 SUPERFAMILY UBA-like 553 595 IPR009060 GO:0005515
Lele49g0028 599 MobiDBLite consensus disorder prediction 323 407 - -
Lele49g0028 599 MobiDBLite consensus disorder prediction 145 168 - -
Lele49g0028 599 Gene3D - 539 599 - -
Lele49g0028 599 PANTHER UBIQUILIN 62 594 IPR015496 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0028 Lele-ChrLele49 184455 190270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0028 67 136 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.000 3.07e-06 45.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0028 49 184455 190270 Lele51g0030 51 203970 209647 hybridization
Lele49g0028 49 184455 190270 Lele52g0035 52 230511 235921 hybridization