LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele49g0024	ATGGATTCCGCAGGGACCTATATGCTGACCACTCTTCTAGTCTTTCAGAACACCATTAAAGAAGAGTTGATCAGGAGCGTGCATGTCTACCGACTGAGGGATGGGAGGGAAAGCGAGGTCGAAAGAGAGTTTGTATTTTCTCGGAGTGGCTCATACGGAGAAATGCGGGCTACCCCAATTCTTAGATTACAGAAATTTCGTGTTTCCGAAGTTTCTGAAGGGTATCAGAATGGAGTCTGGCTTTGTGTCTTTACGTTCCACGCCGATCACAATCTTCAGTGTTCGCGCGTTCCTCGGTTGTTATCAGTCACGAGGAATCCCAAGCTTCAGATGATCCCAACATTGCTTAATGATCTCCATATGATACATGAGTTAAACTGTAAATCAAAAGAGAATGATATGCTGCAAATCTCTCCCGATGAAAGATGCCAAGGAAACAGCAATGATAGCCATCAGCCAAGAAAAATTTTGCTCCAGGATCTCAACTGTCTTCCTTATCCAGATGACATGCCTGAGTTACAAGACAAGGAAGCTGATGAAGAGAGTTTAGGCATGTCTGAGATACCAGGGAATGAATCAGATGATGAAAGTTTAGACCCAGCTGAGTTACCAGGCAAGGACATCATTGACGAAAGTTTGCCAGGTAACATAGAGAAGAAAAAGAGGGCGGCTAGTAAAGATGTAGCAAGCATTGGTTTAACAGATCTGGTGAAATACTTTGATGTGCCAATTGTAGAAGCATCAAGAAATCTAAAAGTTGGACTTACTGTACTAAAGAGGAAATGCAGAGAATTTGGCATTCCCCGCTGGCCACATAGGAAGATTAAATCACTCGACAATCTCATTCACGATCTTCAGGAAGTGGCAGAAAATGAAGAAATAGAGAATGATGCTGCTGTTATGGCCGTGACGAAGAGGCAAAAGATGCTCGAGTGTGAAAAAGAAATTATTGAGAGGAAACCCTCCATGGACATCCAAAGAGAAACCAAGAGATTCAGGCAGGATGTCTTCAAGAGAAGGCACAGAGCTAGAGCTATGACAAAACAGAGCTCCAGTGCCTCCAGCTCCAGTGCCTACAGCTCAAAGACATACCCGTTCCTTTTGACCTGGAGACATTTGAAGCTCAGCAAACGCAAAGACAATTTCCAGTCAGAAATTCTACTTGTTCTGAAACATTGTGGGCTTGGACTTGGGGGTAGTATTGGCGGGAAGATTGCTGCTTCCCTGGAACAGTGGAAATGGTTTCCGTATGCTGTTTTCTGGGCCCCAGACAATGGATGGATAAACACAGATGAAGGTTTTGACCCAGCTCTCACGCGATCGTTGACCTTAATAGCAGCAGAAAAACGATGTGAACAAGTAAACGTTCCTTCTCTCCTCTGGCTTCCTCAAGCCTCCTCCATTACTCTGTTTCAGGCCTTGCGGCCGCCAGTTTATGCTAGCTTCGTCGGCTGGGAGCTTGATATGGGCCTATGCTTTGGGTCTCCCGCTCACGATCACGGACCGGCGTCTAGTGTCAACAGAAATCCGTATTCAGGTTCAGCGAGTACTGACAGTAGGAACGTGGGGTTCTCTACTACAAACAGCAGTGCTGCGAAGAGTCAATTTTCAGAACTAGCAAGTGGGAGCCTCGGGGATTCCCTTCCTTCCCCCAACGGGCAAATTCTAGAAACTCCAAACCTGAAGGTATTCAGTTTTGCAGACTTGAAAGCAGCCACAAGGAACTTCAAACACGATACATTGCTTGGTGAAGGTGGCTTTGGTAAAGTTTACAAAGGTTGGCTGGATGAGAAGACACTGGCACCATCTAAGGCAGGGTCTGGAATTGTGGTTGCTATTAAAAAATTGAACCCGGAAAGTGTGCAAGGATTCCAAGAGTGGCAGTCAGAAGTCAATTTCTTAGGAAGGCTTTCTCATCCCAACTTGGTCAAGCTATTGGGTTACTGTTGGGATGCTGAGGAGCTGCTGCTTGTGTATGAGTTCATGCCAAAGGGAAGTTTGGAGAATCATCTCTTCAGAAGAAATCCTAACATCGAACCACTTTCTTGGAGCATGCGACTCAAAATAGCTATTGGTGCAGCTCGAGGCCTGGCCTTTTTGCACACTTCAGAAAAGCAAGTGATATACAGAGATTTCAAGGCCTCAAATATACTACTTGATGGGAATTATAATGCAAAAATTTCTGACTTTGGCTTGGCAAAATTGGGGCCATCCGGGGGAGAATCACATGTTACAACTAGGGTTATAGGCACTTATGGCTATGCTGCGCCAGAATATGTTGCTACAGGCCACTTGTATGTAAAGAGCGATGTGTATGGATTTGGTGTGGTGCTGCTTGAAATGCTGACAGGTTTGAGGGCACTTGATACGAGGCGACCAAGCGGGCAGCAGAATCTGGTTGAATGGGGGAAGCCGTATCTGTCTAGCAAAAGAAAGTTGAAAACCGTTATGGACGCTAGGATTCAGGGTCAATATTCACTCAAGGCAGCATCACAGGCAGCTAAGCTTACTCTGAAATGCCTACAACCTGACCCTAAACACCGTCCTTCCATGAAAGAAGTAGTTGAGGAATTGGGAGGCATTGAAGAATCAAAGAAAAAGTAA	2604	0.4535	MDSAGTYMLTTLLVFQNTIKEELIRSVHVYRLRDGRESEVEREFVFSRSGSYGEMRATPILRLQKFRVSEVSEGYQNGVWLCVFTFHADHNLQCSRVPRLLSVTRNPKLQMIPTLLNDLHMIHELNCKSKENDMLQISPDERCQGNSNDSHQPRKILLQDLNCLPYPDDMPELQDKEADEESLGMSEIPGNESDDESLDPAELPGKDIIDESLPGNIEKKKRAASKDVASIGLTDLVKYFDVPIVEASRNLKVGLTVLKRKCREFGIPRWPHRKIKSLDNLIHDLQEVAENEEIENDAAVMAVTKRQKMLECEKEIIERKPSMDIQRETKRFRQDVFKRRHRARAMTKQSSSASSSSAYSSKTYPFLLTWRHLKLSKRKDNFQSEILLVLKHCGLGLGGSIGGKIAASLEQWKWFPYAVFWAPDNGWINTDEGFDPALTRSLTLIAAEKRCEQVNVPSLLWLPQASSITLFQALRPPVYASFVGWELDMGLCFGSPAHDHGPASSVNRNPYSGSASTDSRNVGFSTTNSSAAKSQFSELASGSLGDSLPSPNGQILETPNLKVFSFADLKAATRNFKHDTLLGEGGFGKVYKGWLDEKTLAPSKAGSGIVVAIKKLNPESVQGFQEWQSEVNFLGRLSHPNLVKLLGYCWDAEELLLVYEFMPKGSLENHLFRRNPNIEPLSWSMRLKIAIGAARGLAFLHTSEKQVIYRDFKASNILLDGNYNAKISDFGLAKLGPSGGESHVTTRVIGTYGYAAPEYVATGHLYVKSDVYGFGVVLLEMLTGLRALDTRRPSGQQNLVEWGKPYLSSKRKLKTVMDARIQGQYSLKAASQAAKLTLKCLQPDPKHRPSMKEVVEELGGIEESKKK	867

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele49g0024	867	MobiDBLite	consensus disorder prediction	168	214	-	-
	Lele49g0024	867	MobiDBLite	consensus disorder prediction	842	867	-	-
	Lele49g0024	867	Gene3D	Phosphorylase Kinase; domain 1	549	661	-	-
	Lele49g0024	867	Pfam	RWP-RK domain	231	278	IPR003035	-
	Lele49g0024	867	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	707	719	IPR008271	GO:0004672\|GO:0006468
	Lele49g0024	867	ProSiteProfiles	RWP-RK domain profile.	213	298	IPR003035	-
	Lele49g0024	867	MobiDBLite	consensus disorder prediction	199	214	-	-
	Lele49g0024	867	Coils	Coil	275	295	-	-
	Lele49g0024	867	ProSitePatterns	Protein kinases ATP-binding region signature.	582	615	IPR017441	GO:0005524
	Lele49g0024	867	FunFam	Serine/threonine-protein kinase BIK1	545	661	-	-
	Lele49g0024	867	Pfam	Protein tyrosine and serine/threonine kinase	579	858	IPR001245	GO:0004672\|GO:0006468
	Lele49g0024	867	CDD	STKc_IRAK	582	861	-	-
	Lele49g0024	867	PANTHER	OS01G0588500 PROTEIN-RELATED	516	860	-	-
	Lele49g0024	867	SUPERFAMILY	Protein kinase-like (PK-like)	550	858	IPR011009	-
	Lele49g0024	867	ProSiteProfiles	Protein kinase domain profile.	576	861	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele49g0024	867	MobiDBLite	consensus disorder prediction	504	527	-	-
	Lele49g0024	867	MobiDBLite	consensus disorder prediction	505	527	-	-
	Lele49g0024	867	Gene3D	Transferase(Phosphotransferase) domain 1	662	867	-	-
	Lele49g0024	867	FunFam	Serine/threonine-protein kinase PBS1	662	867	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele49g0024	Lele-ChrLele49	159332	169471	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele49g0024	562	859	Glycoside Hydrolase	AT3G07070	51.171	1.91e-97	309

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-2	Lele49g0024		PK_Tyr_Ser-Thr	1.2e-47	CL0016
	TF	RWP-RK	Lele49g0024		PK_Tyr_Ser-Thr	1.2e-47	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele49g0024	49	159332	169471	Lele51g0026	51	171775	183333	hybridization
	Lele49g0024	49	159332	169471	Lele52g0030	52	196054	204291	hybridization