LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele49g0019	ATGGGAGGTTTATTGCGCATTTTTGAGTTCAATCACGGGATCATGGCCAAGAAAGCTCATGCCCACAAGAGACGTCATGGTGGCCTGGAACCTCCTCGCAATAGCCTGGAGCTTCAAGTTGAAGCATTTCAAATTCAATGCCCGCAAGGAGAATTGCCGTATCATTATCAAGTGGAAGATTTGTCGATAAATACTTGTCATTCAGATGCAATTTCAATAAAGAAACTGATCAATGATGAGCTATGCCAACGACCGACTATCAAACCAAATGCACCGAGCCTTGTGGCAAGATTGATGGGTATAGATATGATGCCATCAGATGCTAAATCTACAGTTCCATCAGATGAAATACAAAGTGAAAATAGGGTGAAGAAGTTTTCAGAGAAGGAAGTGAATGGAAGGGGTTCAGGCGGCCGGGGTTCGGGCTACTCATATTCTTGTGGCCACATGGAATTTGACTCTTATTACCAAGACATGGATGATAATGATGGATGGAACCAATATTTGGGAAAAGCAAAGCCCCGGGAGCATCCCCAGGATGAGGAACTACAGAAGTTCAAGAAAGAATTTGAAGCATTTCGAGCAGCAAGGTTAATGGAGTGTTCAAAGGTTGTTGAAGTTGGCAATATCCCCAGAGAATTGCTTGCACGAGAGAGCATAAGCAAGAAAAAGGTGGCAGATCATGCAACTTCCCATGGGCTGGCTACAGAGTTACCAAATAATGGTGGTCCAGAATATCATGGTAATATCATGGAGTTATTTCCTACTAGGCACAAAGAAACCTTTCCTTCAAGGAGCAGAACCTTAAGTAGAGACTTTGAGGAGTCCTTGATGATGAAATCGAACGGCCAACTGGATGGTTCTTCACCAACTCGAATAGTAATTTTGAAGCCTGGTCCTGATAGGGTTTATAGCCATGAGGATAATTGGATCAATCCATCCAGCACTTTACAAGGGAGAAATAGCATAGAAGATTTTCTCGAAGAGGTCAGAGAGCGGCTAAAATGTGAACTGCAGGGGAAAACTTTTAAAAAGGGTTATGTAATTCGGGGAAGTGGGATTGAGACACCTTACAATGAAAAGCCATCAGATCCTAAACAAATTGCTCGTAATATAGCAAAGCAGGTCAGAGAAAGCGTGACTAGAGATGTTGCAACAAATTTGCTCCGCTCAGAATCAACAAGATCGTACAGAAGTGAAATTCAGTTCAATGGATCAAGTTCCCCAGAATTCATCAATAGGGATACCAGGAGACACTTGTCAGATAGGCTAAGAAATGTTCGAAAAAGCAAAGCTTATATTGATATTCCTGAAATGACTTGTGGGAATTCAAGGTCATATCTCTTAGATAATCACAATGACAGGTTAAAACAGGACAATGATAGTATGAATTCAAATGATTTGAGCCACTGGGGAATTTCGAAAGAGGAAAAAGAAATACAAACAGGCTCTTTCAGGTGTGAACCAGTTTACAATATATCGCTTCCCAAAGACTTGTCCCCTAGAAACCTTGTTAGATCCTTGTCTGCTCCTGTATCAGGAACATCATTTGGAAAGCTTCTTCTTGAGGACCGCCATGTTTTAACTGGTGCCCAAATTCGGAGGAAGCTTGAAGCTATTGAAACTGTGTCTGTTGATGTTAAAAGGAAAAAGAAGGATAGATTTAACATTAAGGAAAAAGTTTCCAACTTTAAATATAATCTTGTCCTAAGAGGGAAGCTGTTTGGAAAAAAAATTCAATCAATGGTTGAATCACATAGCAATGAAGATGGTCCCATGATGGTAGATGTCACGAGTGGACCAACAGTTCTTTTGAAATGTGGTGAGAGCCATGAGAACTCCACTGAGGTTCCTCCCAGTCCTGCATCTGTATGCAGCAATGCTCAGGAAGAGATATGGAAACGAGCTGAATATTTAAGTCCAATTTCAACTCCGGATGTAACTTCAAGAGATGGTAACGCTATGCCAGAGTTTTTTAGAGAAATTAGCTCTGGTTTGAATGAGTTAAGGAGGCAGATAAATCAACTTGAGTCTGATGGCCCTGAAGAATTAATGGTCAAACAGGAGCCTGAAGAATCTGAGTTGTCACAATTAGAGGATCCAGCAGAATTTTACATAAGGGATCTGCTTGTTGCTTCTGGTCTATACTTCGGTTCATGGAATAAATCCTCATTAAAAGGGGACACATTTGCGAAGCCTATTGGGAACTCAGTTTTTGAAGAAGTGGAGGAGTCTCATAAAAAAGTGCTCAAGGAGGACGAAACTTCTACAGAGGATCGACGTGACAATAAGTTAGAGCACAAGCTATTGCATGATTTGCTAAATGAAGCACTCTCCATGGTTCTTGGACCACCTTTGACGTTGTCTGGATTCAGAAGGAAACCATGCAGTTCATCCTCCATGCTGCCGCCGCCACGGGGAAAGGAACTTCTGAAGTTAGTATGGGAAATCATCAGAGTTTCTTTACATCCATCGTCTGACATAACATCTGATTCACTTGATACGTTGGTGGCCAGAGATCTGGGATCCAACAACTGGGTTGGATTGGTAGACGATGAGCTTAATGTACTGGAAAGAGAGATAGAACATCTAGTTACTGAAGATCTGATTGAAGAACTCACAACGGATATGATATGCTCTTAG	2643	0.4147	MGGLLRIFEFNHGIMAKKAHAHKRRHGGLEPPRNSLELQVEAFQIQCPQGELPYHYQVEDLSINTCHSDAISIKKLINDELCQRPTIKPNAPSLVARLMGIDMMPSDAKSTVPSDEIQSENRVKKFSEKEVNGRGSGGRGSGYSYSCGHMEFDSYYQDMDDNDGWNQYLGKAKPREHPQDEELQKFKKEFEAFRAARLMECSKVVEVGNIPRELLARESISKKKVADHATSHGLATELPNNGGPEYHGNIMELFPTRHKETFPSRSRTLSRDFEESLMMKSNGQLDGSSPTRIVILKPGPDRVYSHEDNWINPSSTLQGRNSIEDFLEEVRERLKCELQGKTFKKGYVIRGSGIETPYNEKPSDPKQIARNIAKQVRESVTRDVATNLLRSESTRSYRSEIQFNGSSSPEFINRDTRRHLSDRLRNVRKSKAYIDIPEMTCGNSRSYLLDNHNDRLKQDNDSMNSNDLSHWGISKEEKEIQTGSFRCEPVYNISLPKDLSPRNLVRSLSAPVSGTSFGKLLLEDRHVLTGAQIRRKLEAIETVSVDVKRKKKDRFNIKEKVSNFKYNLVLRGKLFGKKIQSMVESHSNEDGPMMVDVTSGPTVLLKCGESHENSTEVPPSPASVCSNAQEEIWKRAEYLSPISTPDVTSRDGNAMPEFFREISSGLNELRRQINQLESDGPEELMVKQEPEESELSQLEDPAEFYIRDLLVASGLYFGSWNKSSLKGDTFAKPIGNSVFEEVEESHKKVLKEDETSTEDRRDNKLEHKLLHDLLNEALSMVLGPPLTLSGFRRKPCSSSSMLPPPRGKELLKLVWEIIRVSLHPSSDITSDSLDTLVARDLGSNNWVGLVDDELNVLEREIEHLVTEDLIEELTTDMICS	880

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele49g0019	880	Pfam	Domain of unknown function (DUF4378)	705	872	IPR025486	-
	Lele49g0019	880	PANTHER	RB1-INDUCIBLE COILED-COIL PROTEIN	1	878	-	-
	Lele49g0019	880	Coils	Coil	659	679	-	-
	Lele49g0019	880	Pfam	DUF761-associated sequence motif	91	107	IPR032795	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele49g0019	Lele-ChrLele49	126675	130493	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele49g0019	73	879	TRM (TON1 Recruiting Motif) Superfamily	AT2G17550	39.616	1.06e-149	456

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele49g0019	49	126675	130493	Lele53g1238	53	21026938	21028062	CCT
	Lele49g0019	49	126675	130493	Lele54g1210	54	17657816	17658955	CCT
	Lele49g0019	49	126675	130493	Lele55g0248	55	1514125	1515249	CCT
	Lele49g0019	49	126675	130493	Lele56g0235	56	1885760	1886899	CCT
	Lele49g0019	49	126675	130493	Lele51g0021	51	136128	139947	hybridization
	Lele49g0019	49	126675	130493	Lele52g0023	52	164013	167781	hybridization

Showing 1 to 6 of 6 entries