Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0018 ATGACGAGCATAAGGCCTTTGTCCGAGGATGTTCGTAGTTCATTGCGTTCTGGCATCTTCTTGTTCGACTTGACCAGGGTTGTGGAAGAACTGGTTTTCAATAGCCTGGATGCTGGCGCAACCAAGGTCTCAGTCTTTGTCTGTGTCAGGAGCTGTTACCTAAAAGTAGTGGATGATGGAGTTGGCATCACTCGAGATGGATTGATGTTGGTTGGAGAAAGATATGCAACATCAAAGTTACTTAGTTTGGCTGATCTGAATGACACAAGTGGAAGCTTTGGTTTTCGAGGGGAAGCTTTAGCTTCAATTTCAGAAGTTTCACTGTTGGAAATTTTGACAAGAACTTTTGGAAGGGCAAATGGATACCGCAAAGTATTGAAGGGCTGCAAGTGCCTATATCTTGGTATAGATGATGATAGAAAGGAAGTGGGAACAACAGTTGTTGTCCGTGATTTATTTCACAACCAACCAGTTCGGAGGAAATATATGCAATCCAGCCCAAAGAAGGTTCTGCAATCAGTCAAGAAATGTATGTTGCGGCTCGCACTTGTGCGTCCAAATATTTTGTTCAAAGTTGTTGACATTGAAAGTGAGGGTGAACTTCTTTGCACACATTCTTCTTCTTCTCCACTTTCACTTTTAACCAGTGGCTTTGGGGTGGAGGTCTCAAGCTCTCTTCATGAATTTCAAGATCAGGATGATGTCATAAAGCTTTCAGGATACATATCTAGCCCCTGCAATAGTTTTACTCCGAAGGCCTTGCAGTATATCTATATTAACTCACAGTTCACCAGCAAAGGCCCAATTCATAAGCTTCTGAGTCAACTGGCTGTTAGGTTTGAGCATCTTGACTCACAGAAGGCAGGTGACAAGTTCCAGAACAAGAAGAGAAGTAGATCTCAAGCATATCCAGCTTATATCTTGAATTTGCTTTGCCCACGGTCTCTGTATGATTTAACTTTTGAGCCATCAAAGACTTCTGTTCAATTTAAGGATTGGGCTTCTATATTGAACTTCATTGAGAAGGCCATAAAAAAATTTTGGGGGAAGAACATAACTCATGGAGAGTCTTCTAATGCCACTCATGTGGAACAAGCAGCTCAACCGTGCAAGGAAATTGACAATGTCATTTTGGCTGAAGCAGGTGAACTTTCTACTTTGTTGTATTTGTTAATTAAGTATGATCAATTTCTGCCATTTGCTTTTAACCTTCTTATATTTGAGTTAAAAATAATACCCCCTTCTAATCTCTTTGATGCAGATATAGTGGACTGTGGAAACCAAAAGAGTAAGGAGTTCATTGACCTTTTATTTTCCACTTCAGACAAGTTAGCTGAAGATGACCAATGCCTATCTGATGGGCAAGTCACGAGATCATCCCTTGGTTATTTGCCCAGGGATGCTGCAAAGTTCAAACAGAAACAAAATAAGAGAGACTTTCTATGCCAGACTGGTTACTCTAGCTTTTCAATGGATGGATCATATACCAAGGGTGGCTCCATTGTGACTAAAAATCATTGCAGTATGTGGAATGATAACAACTGTCTGTCTGGAAGAGATGATTTCTTGGATGGTGGGTTTGCAGCTGGAGAAATCTTCAATGATAATGTATCTTTTGATGAGCCAAGCTCGTCAAAGGGAAATAAATTTCTTGAAGTTGATGATGATATGCTCAGTGAATCATCCCAAGGTGCCTTTCATTATGTCTGTTGTGAGCTCTGTAATGATGTAGAGATTGGCAGGGATTTTCAAAAGCCTTTTCTGAAGAGTTGCTCTAGACGAGGTAGTATTCTGCATGAGAAGGCCTTGTTTGCAAATGATGAACATGAATTTCAAATTGATGGCTATTGCCCCAAAGAAGATCTGGGAGTGTGCAGTGGCAGAGTTGAGAACTTAGGTGCCCATCCTTGTCCAGAAGTTGTCAAAATTTTTAACACATCTAGAGATTCTGTTTTTCTCTCAAGAGCATCTCCTGAAGCAAAATCTTTTCCTTCAGGTTCATGCTCTTTGGCAACACAAATGGGATGCCCAGGGTCTGCTGAAGAAAAATGTTTTCCTTCATATTCAAGCTATCCAGAGTTATTGAGATCTGAACGTTGCCCTATCTTCAAGACACTGTTACCTGAAGCCACTGCATGGGATGTTGATCGTATGACAGGCACTGATCTTGATGTTCTTGGAGGAATACCTAGATGCTACAAATGGGGTGGTTATAAAAGAACTTTAGATGATAAAGAAAATAGATGCAATTTTAGCTGTGATACCTCATACAGCTTCAACTCAGATCAGAGCATGAGAAGTTTTGGAAACTATAGATTGTATTCTGATGGTCCCAATGACTGTAATAATTTAAATTTTACCAAATGGCCAGATCCTAAGACGGTCAAATGGCCTGATTGTTATGATATAGATTCCAACAAATGGTCAGATATTTTAACAGATGAGTCAGGTTGGTCGTGTCCAGTATCATGTGGTGGAAACTACCGAAGACCTAGCAAGAACAGAATAAAAAAGGATCATGTTAGACATCCAGCTTCAGAAAAGAATCATGAAAGATCTAGAAGAAGCTTTTCTTCCCCTCCATTTCACAAAAGCAGAAGAAGGTTTAATTCTTTAAATCAACCTTTAACAATGATAGCCAAAAGACCTGCGGGCCAAACCTCCAACTGTGCTTTAAAGAATAGAGAAGCTGATGAAGAGTGTCCCCAGCAATCTTCTAGTCCACTTTACCCAACCCCTGTGGAACATCTGTTGCTTGAAAATAATTCCATTGTGAAGAAGAAAACAGCTGCTCTGGGAGATATACGTCAGGTTAATAGCAATAAAGAGTCTGAATGGTTTCACAGTTTAAATACTCAAAGCAATTCTCCATTTAAAGAATTGACCTCAAGAAAAGTGGAAGATTCTATGGATTACAGTACAAAATGGGGGAACTGCTCACCTCAAATTCCAACAAGGGATAAATCACTTGATTTTCATAGTCAATATGATATACTTGACATATCTTCTGGATTCTTGCATCTTGCTGGTGATTCATTAGTACCTGAAACTATCACTAAGAACTACCTTGAGAATGCCAGAGTTCTTCATCAGGTGGATAAGAAATTCATTCCCATTGTGGCTGGCGGAAACCTTGCTGTTATTGATCAGCATGCGGCAGATGAGAGAATCAGATTGGAAGAATTACGTCAAAAGGTATTATCAGGAGAGGCAAGGACAATAACCTGTCTAGATGCTGAACAGGAACTGGTGCTGCCTGAGATTGGCTATCAACTATTGTACAGTTATTCTGACCATATTAAAGACTGGGGATGGATCTGTAACATTCATGCTCAAGATTCAAAATCCTTCAAGATGAATCTGGATATTCTCAACAGGCAGCCAGATGTTGTTGCACTTATTACGGTACCCTGCATTTTAGGTGTCAACTTAAATGATACTGATCTTATGGAATTTCTTCAGCAGCTTGCTGACACGGACGGATCATCAACAGTGCCACCCTCTGTTGTTCGAGTTCTTAATTTGAAAGCATGCAGAGGTGCAATTATGTTTGGAGACTCGTTGCTGCCATCCGAATGTTCGCTCATTGTCGAAGAGCTAAAGCAAACATCACTCTCTTTCCAATGTGCTCACGGGCGACCGACTACTGTTCCTCTTGTCAACTTGGAGGCGCTGCATAATCAGATAGCTAAGCTTCGACCATTGATTGATTGCTCAAATGATGAGTGGCAGGGACTACGAAGACATAAAATTAGTGTTGAACGTGCTGCACAACGTTTACGTTCCTCTGGAGAATAG 3798 0.4047 MTSIRPLSEDVRSSLRSGIFLFDLTRVVEELVFNSLDAGATKVSVFVCVRSCYLKVVDDGVGITRDGLMLVGERYATSKLLSLADLNDTSGSFGFRGEALASISEVSLLEILTRTFGRANGYRKVLKGCKCLYLGIDDDRKEVGTTVVVRDLFHNQPVRRKYMQSSPKKVLQSVKKCMLRLALVRPNILFKVVDIESEGELLCTHSSSSPLSLLTSGFGVEVSSSLHEFQDQDDVIKLSGYISSPCNSFTPKALQYIYINSQFTSKGPIHKLLSQLAVRFEHLDSQKAGDKFQNKKRSRSQAYPAYILNLLCPRSLYDLTFEPSKTSVQFKDWASILNFIEKAIKKFWGKNITHGESSNATHVEQAAQPCKEIDNVILAEAGELSTLLYLLIKYDQFLPFAFNLLIFELKIIPPSNLFDADIVDCGNQKSKEFIDLLFSTSDKLAEDDQCLSDGQVTRSSLGYLPRDAAKFKQKQNKRDFLCQTGYSSFSMDGSYTKGGSIVTKNHCSMWNDNNCLSGRDDFLDGGFAAGEIFNDNVSFDEPSSSKGNKFLEVDDDMLSESSQGAFHYVCCELCNDVEIGRDFQKPFLKSCSRRGSILHEKALFANDEHEFQIDGYCPKEDLGVCSGRVENLGAHPCPEVVKIFNTSRDSVFLSRASPEAKSFPSGSCSLATQMGCPGSAEEKCFPSYSSYPELLRSERCPIFKTLLPEATAWDVDRMTGTDLDVLGGIPRCYKWGGYKRTLDDKENRCNFSCDTSYSFNSDQSMRSFGNYRLYSDGPNDCNNLNFTKWPDPKTVKWPDCYDIDSNKWSDILTDESGWSCPVSCGGNYRRPSKNRIKKDHVRHPASEKNHERSRRSFSSPPFHKSRRRFNSLNQPLTMIAKRPAGQTSNCALKNREADEECPQQSSSPLYPTPVEHLLLENNSIVKKKTAALGDIRQVNSNKESEWFHSLNTQSNSPFKELTSRKVEDSMDYSTKWGNCSPQIPTRDKSLDFHSQYDILDISSGFLHLAGDSLVPETITKNYLENARVLHQVDKKFIPIVAGGNLAVIDQHAADERIRLEELRQKVLSGEARTITCLDAEQELVLPEIGYQLLYSYSDHIKDWGWICNIHAQDSKSFKMNLDILNRQPDVVALITVPCILGVNLNDTDLMEFLQQLADTDGSSTVPPSVVRVLNLKACRGAIMFGDSLLPSECSLIVEELKQTSLSFQCAHGRPTTVPLVNLEALHNQIAKLRPLIDCSNDEWQGLRRHKISVERAAQRLRSSGE 1265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0018 1265 Pfam DNA mismatch repair protein, C-terminal domain 218 346 IPR013507 GO:0005524|GO:0006298|GO:0030983
Lele49g0018 1265 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22 201 IPR036890 -
Lele49g0018 1265 SMART DNA_mis_repair_2 214 349 IPR013507 GO:0005524|GO:0006298|GO:0030983
Lele49g0018 1265 MobiDBLite consensus disorder prediction 840 858 - -
Lele49g0018 1265 Gene3D - 215 353 IPR014721 -
Lele49g0018 1265 Pfam MutL C terminal dimerisation domain 1027 1188 IPR014790 GO:0005524|GO:0006298
Lele49g0018 1265 SMART MutL_C_2 1028 1188 IPR014790 GO:0005524|GO:0006298
Lele49g0018 1265 MobiDBLite consensus disorder prediction 831 869 - -
Lele49g0018 1265 Gene3D - 1072 1183 IPR042121 -
Lele49g0018 1265 SUPERFAMILY Ribosomal protein S5 domain 2-like 200 349 IPR020568 -
Lele49g0018 1265 SUPERFAMILY DNA mismatch repair protein MutL 1026 1219 IPR037198 -
Lele49g0018 1265 CDD HATPase_MutL-MLH-PMS-like 11 193 - -
Lele49g0018 1265 Gene3D - 1031 1219 IPR042120 -
Lele49g0018 1265 FunFam MUTL protein homolog 3 1072 1183 - -
Lele49g0018 1265 FunFam DNA mismatch repair endonuclease MutL 1 213 - -
Lele49g0018 1265 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 25 118 - -
Lele49g0018 1265 Gene3D - 2 208 IPR036890 -
Lele49g0018 1265 ProSitePatterns DNA mismatch repair proteins mutL / hexB / PMS1 signature. 94 100 IPR014762 -
Lele49g0018 1265 PANTHER DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL 1 1224 IPR038973 GO:0006298|GO:0016887|GO:0032300|GO:0140664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0018 Lele-ChrLele49 116378 124511 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0018 49 116378 124511 Lele53g1234 53 21008539 21011223 CCT
Lele49g0018 49 116378 124511 Lele54g1206 54 17638956 17641320 CCT
Lele49g0018 49 116378 124511 Lele55g0252 55 1530731 1533410 CCT
Lele49g0018 49 116378 124511 Lele56g0904 56 7692298 7720369 CCT
Lele49g0018 49 116378 124511 Lele51g0020 51 124573 135510 hybridization
Lele49g0018 49 116378 124511 Lele52g0022 52 150438 157066 hybridization