Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0001 ATGAGTAATACCAACGAAAACGAGGAATCTGGCCAGAATGTGCCAGAGAGTGGGGACCAAAGCAAGCTGTTGGTTGATGCACAGGTTCAACTCGAGGCTTCTTCTACTTCTGTTCCAGAAGAGATAACCACGAATAGTGTTGAAAATGTGAAGGTAGAGGCACCTGCTGGTGATAAAAATCTGGAATCAGAGGTTGTGTCGGAGGGTACTCAACAACAAGAAGTTCAAAATGTTCTTCGCTCCGTCCCAGTAGAATCCAGTGCTCAAATTTTGGTTAAAGTTGAGTCGGAACACGTATCTGATGTGAAGAGCGAGGTCAAAGAATTTTCACAGACAGATACGGGGATAGAGAGTGATGCTCTTGTTGGTGAGAAAAATGCTGATACAGCTGAAACAGTTAAGAATGTCAAGCCTGAAGCTTTTGAAGTCACTGCCAGTAAAACTTGCAACAATGGTGATTCCACACCCATGGGTCATAACGAACCTGCAACACCGCAACCTGTTCCTGTTGATACAAACACTGGGATTGAGAATGGCATAAAAGTTGAGACTAAGGTCCATGAAGAGCATGCTGCAACACTTGTAGATAAAGTGAATTCAAACACGAAGCACTCTTTTTTAGATGTTGATTATGAAGGAAATGAGTCGGGGACCGAAGCAGAGCAGTCTGCTTTTATGAAGGAGCTTGAAAATTTCTTTAGGGAGAGGAGCATGGAATTTAAACCTCCTAAGTTCTATGGAGAGGGCCTTAATTGTCTTAAGTTGTGGAGAGCAGTGACCAGACTGGGTGGCTATGACAAGGTAACCTCATGTAAATTATGGCGGCAAGTTGGAGAGTCTTTCAAGCCTCCAAAAACATGTACAACTGTATCATGGACATTTCGAGGATTTTATGAAAAGGCTCTTCTTGATTATGAAAGGCATAAAACAAAAGGTGGTGAGCTTAATGTTCCTATTGCTTCTCATTCAGAGCCTATAAATATCGAAAATCAGGCTTCAGCATCAGGTAGAGCACGGAGAGATGCTGCAGCACGGGCTATGCAAGGTTGGCACTCACAACGGCTTCTTGGTAACGGTGAAGTTAGTGACCCAATTATTAAGGATAGGACGTCCACGCCCATGCAGAAGCGTGAAAAGCAGATTAAAAGCATCAATCTGCTAAAACGTAAGAAACCATCTTACATGGATAATGCAGTCAAAGCTGCACGCAGTAAACCATCAAAGCCACAATTGGACACAGCAGTTGTTGATATTGGACCTCCTGCTGATTGGGTAAAGATAAATGTCCAAAAAACTAAGGATTGTTTTGAGGTTTATGCATTAGTTCCTGGCCTTCTGCGAGAAGAGGTCCGCGTTCAATCAGACCCAGCAGGACGCTTAGTCATTAGTGGTGAACCTGAGCATCCCGATAATCCTTGGGGGGTGACACCTTTCAAAAAGGTTGTAAGCTTGCGTTCAAGGATTGATCCTCATCAGACATCAGCTGTAGTTACATTGCACGGACAGCTGTTTGTTCGTGTCCCATTTGAACAATCAGAGTAG 1542 0.4358 MSNTNENEESGQNVPESGDQSKLLVDAQVQLEASSTSVPEEITTNSVENVKVEAPAGDKNLESEVVSEGTQQQEVQNVLRSVPVESSAQILVKVESEHVSDVKSEVKEFSQTDTGIESDALVGEKNADTAETVKNVKPEAFEVTASKTCNNGDSTPMGHNEPATPQPVPVDTNTGIENGIKVETKVHEEHAATLVDKVNSNTKHSFLDVDYEGNESGTEAEQSAFMKELENFFRERSMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTKGGELNVPIASHSEPINIENQASASGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDRTSTPMQKREKQIKSINLLKRKKPSYMDNAVKAARSKPSKPQLDTAVVDIGPPADWVKINVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLRSRIDPHQTSAVVTLHGQLFVRVPFEQSE 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0001 513 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 413 513 IPR002068 -
Lele49g0001 513 CDD ARID 221 306 - -
Lele49g0001 513 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 71 512 IPR045147 GO:0006357
Lele49g0001 513 FunFam AT-rich interactive domain-containing protein 3 219 318 - -
Lele49g0001 513 MobiDBLite consensus disorder prediction 1 50 - -
Lele49g0001 513 SUPERFAMILY ARID-like 213 323 IPR036431 GO:0003677
Lele49g0001 513 ProSiteProfiles ARID domain profile. 219 310 IPR001606 GO:0003677
Lele49g0001 513 Pfam ARID/BRIGHT DNA binding domain 222 306 IPR001606 GO:0003677
Lele49g0001 513 MobiDBLite consensus disorder prediction 1 74 - -
Lele49g0001 513 SMART ARID_2 216 306 - -
Lele49g0001 513 Gene3D - 410 513 IPR008978 -
Lele49g0001 513 SUPERFAMILY HSP20-like chaperones 422 509 IPR008978 -
Lele49g0001 513 CDD ACD_sHsps_p23-like 432 508 - -
Lele49g0001 513 Gene3D - 219 317 IPR036431 GO:0003677
Lele49g0001 513 FunFam AT-rich interactive domain-containing protein 3 405 513 - -
Lele49g0001 513 MobiDBLite consensus disorder prediction 146 172 - -
Lele49g0001 513 SMART bright_3 220 311 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0001 Lele-ChrLele49 8740 19140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0001 212 511 ARID Transcription Factor Family AT1G76510 64.821 1.93e-131 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lele49g0001 ARID 1.3e-16 CL0123