Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1437 ATGAGTGGGAATGACAATTCAAAAGTCGTGGTGGTGGATCGATTGCTTCTTTCTATCAAGGAGATCTCGGGGTTACCTGAGTGTCGAAACGTTTGCAAGAGGTTGTATGGGAATTTAGTTCGGAGGGTGAAGCTATTGAGCCCGCTGTTTGAGGAAATTAAGGATAGTGATTGTGGGTTGCTTAGCGACGAACATATTAGATCGTTTGTATCGCTGGGAAATGCTTTGGATTCATCTAAGAGCCTTCTCAAGTTCATGAACCAAGGGAGTAAGCTTTATCTGGCTTTGCAGAGGAATGACATGGCAGAAAAGTTCCAACAAATAAATGACCAAATTGAATCAGCAATTAGTGTACTGCAATATGAAAAGCTTGAGATATCAGAGGAAGTTCGAGAACAGATTGAACTTGTGCATGCTCAATTTAAAAGAGCAAATGCTAGAACGGAATTAGCTGATTTACAACTAGATTTGGATTTAGCTGTAGCACAACAAGAAAAAGACCCAGATCCTGAAATACTCAATAGGCTTTCTGAGAAGTTGCATCTGAAGACTATAAATGAGCTCAAGAAAGAATCAGCTGAATTACATGAGTTGGTGATCACAAGTGGTGGAGAACCAGGGGACTCTATTGAGATTATGTCGTCTCTTCTAAAGAGACTGAAGGACTGTGTGCACAATGAAAACCCTGAAGTTGACCCCCGTGAGGGTGAAAAAAATTCAATGAAGCACAGATCTCCTGTAATTCCAGATGATTTTAGATGTCCAATATCTCTTGAATTAATGAAAGATCCTGTAATTGTCTCTACTGGACAGACATATGAAAGATCCTGCATTCAAAAATGGCTTGACGCTGGGAACAAAACATGTCCCAAGACACAACAAACACTTTTGCACACCGCCCTAACCCCTAACTATGCTTTGAAGAGTCTGATTGCTTTGTGGTGTGAAAACAATGGTGTTGAGCTGCCAAAAAAGCAAGGGAGCTGTAAAACAAAGAAATCTGGAAGCAGTCTTTCAGATTGTGATCGAGCTGCTATTAATGCTTTATTGGATAGGCTTGCAAATGGTGATATGGAACAGCAAAGGGCCGCAGCTGGTGAGCTCCGATTGCTAGCTAAGAGGAATGCTGATAATAGAGTATGTATTGCTGAGGCAGGAGCAATACCGCTTCTTGTAGAGTTGCTGTCTTCCTCAGATCCTCGAACCCAGGAGCATGCTGTCACAGCGCTTCTCAATCTGTCCATCAATGAGAGTAACAAAGGAACAATTGTAAATGCAGGAGCTATCCCAGATATTGTAGATGTGCTGAAAAATGGAAGTATGGAAGCCAGAGAAAATGCAGCTGCAACTCTCTTTAGTTTGTCGGTTCTAGATGAGAACAAGGTTGCAATAGGAGCAGCTGGGGCTATCCCTGCTTTGATTAGCTTGCTTTGTGAAGGCACTCCCAGAGGTAAAAAGGATGCTGCTACAGCTATTTTTAACCTTTCTATTTATCAAGGAAACAAAGCTAGAGCTGTAAAGGCTGGTATAGTAGCGCCACTAATGACATTTCTTATTGACGCTGGAGGTGGGATGGTGGATGAAGCACTAGCTATACTGGCAATTCTTGCAAGCCATACAGAAGGCAGGACAGCTATTGGTCAAGCTGAACCTATTCCTATTCTAGTCGAGGTTATACGAACTGGTTCCCCACGGAACAGAGAGAATGCTGCTGCGGTGTTGTGGTCGCTTTGCATGGGAGATCTTCTGCAGTTGAAACTGGCAAGAGACCATGGTGCGGAAGAAGCATTGAGGGAATTATCAGAAAATGGCACTGATAGGGCCAAAAGAAAAGCGGGAAGTATATTAGAACTCTTGCAGAGAATGGAAGTGGAAGATAATTTGCCGAGGTCTTAA 1896 0.4267 MSGNDNSKVVVVDRLLLSIKEISGLPECRNVCKRLYGNLVRRVKLLSPLFEEIKDSDCGLLSDEHIRSFVSLGNALDSSKSLLKFMNQGSKLYLALQRNDMAEKFQQINDQIESAISVLQYEKLEISEEVREQIELVHAQFKRANARTELADLQLDLDLAVAQQEKDPDPEILNRLSEKLHLKTINELKKESAELHELVITSGGEPGDSIEIMSSLLKRLKDCVHNENPEVDPREGEKNSMKHRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGNKTCPKTQQTLLHTALTPNYALKSLIALWCENNGVELPKKQGSCKTKKSGSSLSDCDRAAINALLDRLANGDMEQQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSSDPRTQEHAVTALLNLSINESNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVLDENKVAIGAAGAIPALISLLCEGTPRGKKDAATAIFNLSIYQGNKARAVKAGIVAPLMTFLIDAGGGMVDEALAILAILASHTEGRTAIGQAEPIPILVEVIRTGSPRNRENAAAVLWSLCMGDLLQLKLARDHGAEEALRELSENGTDRAKRKAGSILELLQRMEVEDNLPRS 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1437 631 Coils Coil 143 163 - -
Lele48g1437 631 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 321 IPR013083 -
Lele48g1437 631 SUPERFAMILY ARM repeat 345 619 IPR016024 -
Lele48g1437 631 SMART Ubox_2 251 314 IPR003613 GO:0004842|GO:0016567
Lele48g1437 631 FunFam RING-type E3 ubiquitin transferase 345 462 - -
Lele48g1437 631 FunFam RING-type E3 ubiquitin transferase 245 321 - -
Lele48g1437 631 Pfam U-box domain 248 318 IPR003613 GO:0004842|GO:0016567
Lele48g1437 631 FunFam RING-type E3 ubiquitin transferase 8 122 - -
Lele48g1437 631 CDD RING-Ubox_PUB 252 294 IPR045210 -
Lele48g1437 631 Gene3D - 339 425 IPR011989 -
Lele48g1437 631 ProSiteProfiles U-box domain profile. 247 321 IPR003613 GO:0004842|GO:0016567
Lele48g1437 631 Gene3D - 521 629 IPR011989 -
Lele48g1437 631 SUPERFAMILY RING/U-box 241 323 - -
Lele48g1437 631 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 386 428 IPR000225 GO:0005515
Lele48g1437 631 SMART arm_5 498 538 IPR000225 GO:0005515
Lele48g1437 631 SMART arm_5 457 497 IPR000225 GO:0005515
Lele48g1437 631 SMART arm_5 375 415 IPR000225 GO:0005515
Lele48g1437 631 SMART arm_5 416 456 IPR000225 GO:0005515
Lele48g1437 631 SMART arm_5 539 579 IPR000225 GO:0005515
Lele48g1437 631 FunFam RING-type E3 ubiquitin transferase 463 626 - -
Lele48g1437 631 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 427 469 IPR000225 GO:0005515
Lele48g1437 631 PANTHER U BOX DOMAIN-CONTAINING 36 620 - -
Lele48g1437 631 Gene3D - 426 520 IPR011989 -
Lele48g1437 631 Pfam Armadillo/beta-catenin-like repeat 458 496 IPR000225 GO:0005515
Lele48g1437 631 Pfam Armadillo/beta-catenin-like repeat 375 414 IPR000225 GO:0005515
Lele48g1437 631 Gene3D - 9 122 IPR036537 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1437 Lele-ChrLele48 18157342 18162114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g1437 11 623 U-box Gene Family AT3G54850 67.752 0.0 806