Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1431 ATGATTCCCATTAGCTGCTGCGTCATTCTCTCACTATGGCTCCTCTGCTTCCCTTTCTCTCCGCCTATCATCAAAGCTGCCTTCAACCCTCAACATGTGGCTATGGATGTTCATAGGAGAATCAACGCGTCTCTCTCCCGAAGACAACTCCTCTCCGTTGACAAATCCGACCGAGCTCCAGGCTGCCTCACCGGCAACCCCATCGACGACTGCTGGCGGTGCGATCCCAACTGGGCCACCGACCGCCAGAAACTAGCCGACTGCGGTATGGGGTTCGGCACCGACGCTGCAGGCGGCAAGGGTGGCCAGTTCTACATCGTCACCGACCCTTCCGATAACGATCCGGTGAACCCAGCACCGGGAACTCTTCGGCACGCCGTAATCCAAGACGTACCCCTCTGGATCGTCTTCTCCGGCAACATGATGATCAACCTGAAGCACGAGCTCATGTTCAACAGCTTCAAGACCATAGACGGACGGGGCGCCAGCGTCCACATCACCGGCAACGGCTGCATCACCCTGCAGTACGTCTCCAACGTCATCATCCACAACGTGCACATCCACCACTGCAGGCCATCGAGCAAAACAATGATACGGGCGAGTCCAACAAAGGTAGGACTGAGAGGGGGATCGGACGGCGACGGGGTGTCCATCTATGGGTCAGAGAAGATCTGGATAGACCATTGCACGCTGGCGTATTGCACGGACGGCCTTATAGACGCGATAATGGGGTCGACGGGGATAACGATATCGAACAACCATTTCTCTCATCACGACAAGGTGATGCTGCTGGGGCACGACGATAGGTATGTAGCGGATAGGAGGATGCAGGTGACAGTAGCATTCAATCACTTCGGGGAGAAGCTGGTGCAGCGGATGCCACGGTGCAGACACGGGTACGTGCACGTGGTGAACAACGATTACACGCAGTGGGAGATGTACGCCATCGGCGGCAGTGCGGCGCCCACCATAAACAGCCAGGGTAACCGTTACACTGCTCCGGCCAATGCTAATGCTAAAGAGGTGACGAAGCGGGTGGAGACGGATGAGAGAGAGTGGGCGAGTTGGAATTGGAAGACGGAGGGGGACTTATTGGTGAACGGAGCATACTTCGTGGCATCGGGCGATTGGGTGAGCACCCAATACGAGCAGGACTCGTCTCTGCCGCCCCAATCCGCCCTTCACATCGACCTCCTCACCGTCAACGCCGGCGTCTTCAACGATCCCAGGGAAAGTGGGTATATATATCCGGCGTTCCTGGAGAGCATGCCCAGGCATGGCAGCACCCATAATGCTTCACCGCCCTCCTCCCCCTTTTTGTCTGTTGTCTTCATTCTCTTCACCTCTACTTTTCTACACTATTAGAGGATTTTAGAGATACGCAGAATTTGGGGACAGAGTGAAGCAGTGGAAATGCAAGTTGATGGAGCTAGTTTCATAAAGGTGTTGTTGATTCAACCCTCTTGCAGGCATCTCAAAAGATACCCCATTTCTGTACACCATGTTCCAATAGAAAAAGCTACCCAACGAGCATTTGCTCCCATTTCCAACGTAACGTTGATTGCAGGTTTAGAGAACCTTTGA 1584 0.5436 MIPISCCVILSLWLLCFPFSPPIIKAAFNPQHVAMDVHRRINASLSRRQLLSVDKSDRAPGCLTGNPIDDCWRCDPNWATDRQKLADCGMGFGTDAAGGKGGQFYIVTDPSDNDPVNPAPGTLRHAVIQDVPLWIVFSGNMMINLKHELMFNSFKTIDGRGASVHITGNGCITLQYVSNVIIHNVHIHHCRPSSKTMIRASPTKVGLRGGSDGDGVSIYGSEKIWIDHCTLAYCTDGLIDAIMGSTGITISNNHFSHHDKVMLLGHDDRYVADRRMQVTVAFNHFGEKLVQRMPRCRHGYVHVVNNDYTQWEMYAIGGSAAPTINSQGNRYTAPANANAKEVTKRVETDEREWASWNWKTEGDLLVNGAYFVASGDWVSTQYEQDSSLPPQSALHIDLLTVNAGVFNDPRESGYIYPAFLESMPRHGSTHNASPPSSPFLSVVFILFTSTFLHYXRILEIRRIWGQSEAVEMQVDGASFIKVLLIQPSCRHLKRYPISVHHVPIEKATQRAFAPISNVTLIAGLENL 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1431 527 PANTHER PECTATE LYASE 18-RELATED 40 407 IPR045032 GO:0030570
Lele48g1431 527 SUPERFAMILY Pectin lyase-like 62 380 IPR011050 -
Lele48g1431 527 Gene3D - 65 407 IPR012334 -
Lele48g1431 527 SMART amb_all 140 337 IPR002022 -
Lele48g1431 527 Pfam Pectate lyase 147 327 IPR002022 -
Lele48g1431 527 PRINTS Pollen allergen Amb family signature 212 233 IPR018082 -
Lele48g1431 527 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
Lele48g1431 527 PRINTS Pollen allergen Amb family signature 385 408 IPR018082 -
Lele48g1431 527 PRINTS Pollen allergen Amb family signature 112 137 IPR018082 -
Lele48g1431 527 PRINTS Pollen allergen Amb family signature 292 311 IPR018082 -
Lele48g1431 527 PRINTS Pollen allergen Amb family signature 88 105 IPR018082 -
Lele48g1431 527 PRINTS Pollen allergen Amb family signature 356 380 IPR018082 -
Lele48g1431 527 PRINTS Pollen allergen Amb family signature 148 164 IPR018082 -
Lele48g1431 527 FunFam Pectate lyase 65 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1431 Lele-ChrLele48 18128372 18131333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g1431 1 406 Polysaccharide Lyase AT3G53190 63.636 0.0 532