Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1423 ATGACAGATTTTCAACCGCTACAACAGAAGCCTGACTCCACCGATGCCCATACTGAGTTTGAACGTGGGCTGGAGGACTTTATGCGGGGCCACTTGGACGATTGCATGTCCTTTGCTTCGTGTAGTTCTGCCCGAACTCAGGATGGTGAGGATGATGAGGGTGATCAGCTAGTTAGGAGGAGAAGAAGATCTGATCTTGAGGGGGATGATTTAGCAGAGTCATCAGCCGCACGCCGCCGCCACTCACGGATTTTGAGCAGATGGGCTGCCCACCAGGCCCAAGAGATGATAATCACAATTGAGAGGAGGAATCGGGAGTCTGAGTTGATGGCACTTGCGGGACTACACACAGTCTCGATGTTGGACTCCTCTTTCTTGAGGGGATCACAGACTCCAACTTCTGGCCAGGAGGGGGCTGTAGAGAGGCCCAGCACTCAGGCTTCTGCAATTCTTCAGATGTGGCGTGAATTGGAGGATGAACACTTACTTAATCGGGCGCGGGGAAGAATGAGGGAAAGGTTGCGTCAACAAAGGGTTGCCGACTCTAATGCCAATGGATCAAGTACCATGTCGGATAGCCGGGGAAGTGAGAACCAGGGGAGTTTGGTGGATGCAAGTGAAAGTGAAAATGATTATGGGACCTGGTCAAATGATCAGATTCAATCACAGCATGAAAATGGTGATCGTAATGGGTCTAGCAGGGAGCAATCTCCTGATCTTGTTGAAGTTGAGAGGGAGAGAGTTCGACAGATTGTGCGGGGATGGATGGAAAGTGGCATCAGCGATCATTCGTCTAGTGCAAGTCAGAGAAACAATAATCGCAGAGCAGAGTGGCTTGGTGAAACAGAGCGTGAAAGAGTAAGAATTGTCAGGGAGTGGGTGCAAATGACAAGTCAGCAGCGAGGTTCTCGTGGGAGCCGGAGGGATAGTCAAGTCACTGAAAGTGGTTCTCGAGTTGAGAGAACCCGTGATGGATTGTTAACTGATCATGATGAGGGCCAGCCAGAGCATGTACGCAGAGATTTATTGAGGTTGCGTGGAAGACAAGCTCTGGTTGATTTGCTTGTGAGGGTTGAAAGGGAAAGACAAAGAGAGCTGCAGGGCTTGTTGGAACACCGCGCTGTTTCAGATTTTGCTCATCGTAATCGCATTCAGTCATTACTCAGAGGTAGATTCCTCCGAAATGAAAGAACTATAGAAGATGAGAGGCCTCCTTCTGTGGCTGCAAATGAATTAATTCAGTTAAGGCAACGTCACACAGTCTCTGGTTTAAGAGAAGGGTTTCGCTCAAGATTAGAAAATATTGTTCGTGGTCAAGCTAGCAGCAATTCTGATGCCACATCTAATAGTAATGCCAGTGAAACTAGAAGTGATGTGAACCAAGAAAACATTTCGATAGATGCTCAGCATGAAAGTTATGAACAAGGGCCGATTAGGAGCATGGAAACTGACGTGCAGCAGTTGGCTGATCAAACAAGAACTTTTGAAAGTAGCACTAGTGAGAATATTAGTTGGCAAGAAACTAGTAATCAAGGAGGGAATTGGCAGGAACAAGTTACTGAAGATGGTCGTGGAAATTGGCAACGGAGAGCTTATGGTCCATTGAATCAGTTAAGAGACGGAAGTGCTATTAGTGATTGGCATCAGGATTCTCCGATGAATGTAGAAGGGGAAGATGCTCATACACAAGGTGCTCGGGAAATTTGGCGTGAGGATAATTCAAGAGAAGCTGCTGGTAATTGGTCTGAAGAACCTTCTGGTCCTCCAAGGAATCGACGTGGTGTTCCTTTTAGGAGATTCAATAGATTTCATCCGCCTGATGATGATAATGTATATAGCATGGAGCTTAGAGAACTTTTGAGCAGGAGAAGTGTTTCTAATCTTCTTCGCAGTGGTTTCCGGGAAAGTCTGGACCAATTAATCCAGTCATACGTGGAAAGGCAAAATCGTGCACCTATTGACTGGGATTTGCATAGAAACTTGCCAACACCAACTCCTGCCTCACCTGATAGGGATCCTGAACAACAGGCAGATGAACGTAGTGGGATTCAACATGTCGCCATTAATGGCCCTTCTCTTGTGTTGCCATCTCCACCAGTTCCTCCCCCTCAACCACTTTGGCACCAGGACTTGCATCGGACTGGATGGTCTCGCCATAGCATGCATCGATCTGAAATGGAATGGGAGATAATCAACGATTTGAGATCAGATATGGCAAGACTTCAGCAAGGCATGAATCACATGCAGAGGATGTTGGAGGCTTGTATGGATATGCAACTGGAGTTACAGCGCTCTGTCAGACAGGAAGTGTCTGCAGCACTGAATCGTTCAGCGGGGGAAAGTGGAACCGGGGTGGAGACATCTGAGGATGGGTCTAAATGGGGCCATGTGAAAAAAGGAACTTGTTGTGTTTGTTGTGATAGCCATATTGATTCGCTCTTGTACAGATGTGGACACATGTGCACTTGTTCAAAATGTGCCAATGAATTAGTTCGTGGTGGAGGGAAATGCCCTTTATGCCGAGCACCTATTGTTGAGGTGATCCGAGCATATTCCATTATGTAA 2565 0.471 MTDFQPLQQKPDSTDAHTEFERGLEDFMRGHLDDCMSFASCSSARTQDGEDDEGDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAAHQAQEMIITIERRNRESELMALAGLHTVSMLDSSFLRGSQTPTSGQEGAVERPSTQASAILQMWRELEDEHLLNRARGRMRERLRQQRVADSNANGSSTMSDSRGSENQGSLVDASESENDYGTWSNDQIQSQHENGDRNGSSREQSPDLVEVERERVRQIVRGWMESGISDHSSSASQRNNNRRAEWLGETERERVRIVREWVQMTSQQRGSRGSRRDSQVTESGSRVERTRDGLLTDHDEGQPEHVRRDLLRLRGRQALVDLLVRVERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERTIEDERPPSVAANELIQLRQRHTVSGLREGFRSRLENIVRGQASSNSDATSNSNASETRSDVNQENISIDAQHESYEQGPIRSMETDVQQLADQTRTFESSTSENISWQETSNQGGNWQEQVTEDGRGNWQRRAYGPLNQLRDGSAISDWHQDSPMNVEGEDAHTQGAREIWREDNSREAAGNWSEEPSGPPRNRRGVPFRRFNRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQNRAPIDWDLHRNLPTPTPASPDRDPEQQADERSGIQHVAINGPSLVLPSPPVPPPQPLWHQDLHRTGWSRHSMHRSEMEWEIINDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGESGTGVETSEDGSKWGHVKKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYSIM 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1423 854 MobiDBLite consensus disorder prediction 656 680 - -
Lele48g1423 854 MobiDBLite consensus disorder prediction 307 334 - -
Lele48g1423 854 MobiDBLite consensus disorder prediction 168 243 - -
Lele48g1423 854 MobiDBLite consensus disorder prediction 571 597 - -
Lele48g1423 854 ProSiteProfiles Zinc finger RING-type profile. 802 841 IPR001841 -
Lele48g1423 854 MobiDBLite consensus disorder prediction 42 77 - -
Lele48g1423 854 Coils Coil 731 751 - -
Lele48g1423 854 MobiDBLite consensus disorder prediction 256 277 - -
Lele48g1423 854 MobiDBLite consensus disorder prediction 126 146 - -
Lele48g1423 854 MobiDBLite consensus disorder prediction 297 334 - -
Lele48g1423 854 MobiDBLite consensus disorder prediction 436 463 - -
Lele48g1423 854 MobiDBLite consensus disorder prediction 259 275 - -
Lele48g1423 854 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 789 852 IPR013083 -
Lele48g1423 854 MobiDBLite consensus disorder prediction 46 77 - -
Lele48g1423 854 SUPERFAMILY RING/U-box 801 847 - -
Lele48g1423 854 MobiDBLite consensus disorder prediction 485 521 - -
Lele48g1423 854 MobiDBLite consensus disorder prediction 179 237 - -
Lele48g1423 854 CDD mRING-HC-C3HC5_NEU1 801 841 - -
Lele48g1423 854 Pfam Zinc finger, C3HC4 type (RING finger) 799 846 - -
Lele48g1423 854 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 110 854 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1423 Lele-ChrLele48 18071560 18076458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g1423 766 848 C3H Transcription Factor Family AT3G06140 31.325 3.40e-07 51.6