Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1406 ATGGAGAAGACACGTTCTTCTGCAAAAACCATGTCGGTCTTGCCTTACGAGACCCCTAGACTCAGAGACCATTACCTTGTGGGGAAGAAGCTCGGGCAAGGCCAATTTGGGACCACCTACCTCTGTACGCACAAGGTATCGGGCGAACAATACGCCTGCAAATCGATTCCCAAGCGGAAGCTCTTGTGCAAGGAGGATTACGAAGACGTGTGGAGAGAGATCCAGATCATGCATCATCTGTCGGAGCACCCGAATGTGGTTCGGATACAAGGGACGTACGAGGACGCCGTGTTTGTGCACCTGGTTATGGAGCTGTGTGCTGGGGGTGAGCTGTTTGATAGGATTATTCAGAAGGGGCATTACAGTGAGAGAGAGGCGGTCAAGTTGATAAAGACCATTGTTGGCGTGGTCGAAGCTTGTCACTCTCTTGGGGTAATGCACAGGGATCTCAAGCCTGAGAATTTCCTGTTTGATAGTTCTTGTGACGATGCTCAGATGAAGGCTACGGATTTTGGCCTCTCTGTCTTTTACAGGCCAGGACAAACCTTTTCCGATGTAGTTGGAAGCCCCTACTATGTTGCCCCTGAGATTTTGTGCAAGCGTTATGGACAAGAAGCAGATGTATGGAGTGCAGGAGTTATCCTTTACATCTTGCTGAGTGGGGTCCCACCTTTTTGGGCCGCACCTGCAGAAACTGAACCAGGCATCTTCAGACACATTTTACAAGGAAAGCCAGATTTTCAATCTGACCCATGGCCAAGCATATCAGAAAGTGCTAAAGATTTGGTTAGAAAAATGCTAGAGAAGGACCCTAGGAAAAGGATTTCTGCCCATGAAGTCTTGTGTCACCCTTGGATAAATGACGATAATGTTGCCCCTGACAAACCTCTGGATTCCGCAGTTTTATCCCGTTTGAAACAGTTCTCAGCTATGAATAAAGTCAAGAAGATGGCTTTAAGGGTGATAGCAGAAAGACTTTCAGAAGAAGAAATCGGTGGTTTAAAAGAGTTGTTCAAGATGATTGACACAGACAACAGTGGGACTATAACATTTGAGGAACTCAAAGAAGGTCTAAGAAGAGTTGGTTCTAATCTAATGGAATCCGAAATTAAATCCCTAATGGATGCGGCTGACATAGACCAAAGTGGAACAATTGACTATGGTGAATTTCTTGCTGCCACACTGCACATGAATAAGATGGAAAGAGAGGAGAATTTAGCTGCAGCATTTTCCTATTTTGACAAAGATGGTAGTGGATACATCACCATTGATGAGCTTCAACTGGCTTGTAAAGAGTTTGGCTTAGGTGACGTGAATCCAGATGTTATGTCAGAGATTGATCTAGACAATGATGGGAGAATTGATTATGGGGAGTTTGTAGCAATGATGAAGCAGGGAGAGGGAGGGGTTGGCAGCAGCAGAACCACAAGAGGCAATTTGAACTTCAATATAGCAGATGCCTTCCAACAAGTAAATGACTCGTCCTGA 1488 0.4543 MEKTRSSAKTMSVLPYETPRLRDHYLVGKKLGQGQFGTTYLCTHKVSGEQYACKSIPKRKLLCKEDYEDVWREIQIMHHLSEHPNVVRIQGTYEDAVFVHLVMELCAGGELFDRIIQKGHYSEREAVKLIKTIVGVVEACHSLGVMHRDLKPENFLFDSSCDDAQMKATDFGLSVFYRPGQTFSDVVGSPYYVAPEILCKRYGQEADVWSAGVILYILLSGVPPFWAAPAETEPGIFRHILQGKPDFQSDPWPSISESAKDLVRKMLEKDPRKRISAHEVLCHPWINDDNVAPDKPLDSAVLSRLKQFSAMNKVKKMALRVIAERLSEEEIGGLKELFKMIDTDNSGTITFEELKEGLRRVGSNLMESEIKSLMDAADIDQSGTIDYGEFLAATLHMNKMEREENLAAAFSYFDKDGSGYITIDELQLACKEFGLGDVNPDVMSEIDLDNDGRIDYGEFVAMMKQGEGGVGSSRTTRGNLNFNIADAFQQVNDSS 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1406 495 PANTHER SERINE/THREONINE-PROTEIN KINASE 20 459 - -
Lele48g1406 495 Pfam Protein kinase domain 27 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele48g1406 495 ProSitePatterns EF-hand calcium-binding domain. 342 354 IPR018247 -
Lele48g1406 495 SMART serkin_6 25 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele48g1406 495 SUPERFAMILY EF-hand 315 467 IPR011992 -
Lele48g1406 495 ProSitePatterns EF-hand calcium-binding domain. 447 459 IPR018247 -
Lele48g1406 495 Pfam EF-hand domain pair 334 394 IPR002048 GO:0005509
Lele48g1406 495 Pfam EF-hand domain pair 404 464 IPR002048 GO:0005509
Lele48g1406 495 FunFam Calcium-dependent protein kinase SK5 193 291 - -
Lele48g1406 495 CDD EFh 406 464 IPR002048 GO:0005509
Lele48g1406 495 FunFam Calcium-dependent protein kinase 1 27 110 - -
Lele48g1406 495 SMART efh_1 437 466 IPR002048 GO:0005509
Lele48g1406 495 SMART efh_1 333 361 IPR002048 GO:0005509
Lele48g1406 495 SMART efh_1 405 433 IPR002048 GO:0005509
Lele48g1406 495 SMART efh_1 369 397 IPR002048 GO:0005509
Lele48g1406 495 ProSitePatterns EF-hand calcium-binding domain. 414 426 IPR018247 -
Lele48g1406 495 FunFam Calcium-dependent protein kinase 1 294 467 - -
Lele48g1406 495 ProSiteProfiles EF-hand calcium-binding domain profile. 365 400 IPR002048 GO:0005509
Lele48g1406 495 Gene3D Phosphorylase Kinase; domain 1 26 110 - -
Lele48g1406 495 CDD EFh 334 393 IPR002048 GO:0005509
Lele48g1406 495 ProSiteProfiles EF-hand calcium-binding domain profile. 401 436 IPR002048 GO:0005509
Lele48g1406 495 ProSiteProfiles Protein kinase domain profile. 25 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele48g1406 495 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Lele48g1406 495 ProSiteProfiles EF-hand calcium-binding domain profile. 441 469 IPR002048 GO:0005509
Lele48g1406 495 SUPERFAMILY Protein kinase-like (PK-like) 11 309 IPR011009 -
Lele48g1406 495 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Lele48g1406 495 ProSiteProfiles EF-hand calcium-binding domain profile. 329 364 IPR002048 GO:0005509
Lele48g1406 495 FunFam CDPK-related kinase 3 17 185 - -
Lele48g1406 495 Gene3D - 296 466 - -
Lele48g1406 495 Gene3D Transferase(Phosphotransferase) domain 1 111 295 - -
Lele48g1406 495 CDD STKc_CAMK 24 285 - -
Lele48g1406 495 ProSitePatterns EF-hand calcium-binding domain. 378 390 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1406 Lele-ChrLele48 17969019 17971859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g1406 1 495 EF-hand Containing Proteins AT4G09570 80.645 0.0 823
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lele48g1406 Pkinase 1.3e-74 CL0016