Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1404 ATGGAGAGACCAAGCATGGAGATGGAATCTTGTGTTCCACCCGGGTTTAGGTTTCGTCCGACAGAGGAAGAACTTGTAGGATACTACCTCAAGAGGAAGATAAACTCGTTGAAAATCGATCCAGATGTTATTGCACAGATCGATCTCTACAGAATTGAACCATGGGACATTCAAGATAAATGCAAGATGGGGTACGAGGAAGAGAAGGAGTGGTATTTCTTCAGTCACAAGGATAAGAAATACCCAACAGGGACGAGAACAAACAGAGCGACAGCAGCAGGTTTCTGGAAAGCAACGGGAAGGGACAAGGCAGTGATGTCCAAGAAGAACAGACTCATAGGCATGAGAAAGACCCTCGTCTTCTACAAGGGACGTGCCCCTTATGGCTCCAAGACCGATTGGATTATGCATGAATTTCGCCTCCAAACCTCCCAACACTCCCCTCCTCAGGAAGAAGGATGGGTGGTGTGCCGAGCATTCAAGAAACCTAGTCCTACTCAGCACAGACCAAGTTTCGAATGTTGGAGTGGCCAAGCACATTTTTTCAGGGACCAGATAAGCAATACCACAAGACCTCAGTCTCTATCATTTACCAACGAAACCCTAAATCCGGTGCTTTATCCAGCTAACGAAGGAACAAGCTTTAGCAATGCCTTCACTTCGAATCATCATCGCCAACTGTTTCTGCCAAACGATGCCGTTTTGGAAGATCACAACAACAACGGCCAGCTTGTTGAGCTCATTCCACAGCTAGATAGCCCCACGGCTTCTCTATCAGCTAGAGCAGTGAAACAAAATGGCTTCACAAATGAAGACAATTACAGTCAAGAAAGGACCAATAATAACAACAACGTTAACGATGGCCAAGGCATTATTGATTGGACGAGCTTGGACAACTTGTTATCTTCACAGTTCGCAGATGATACTGCCGCTGCTGATTATTTTTCTCATCCAAACATGCCCTTGATGCCACAAACTAGTCGTGACCTACAAGTATTGCAACCTCAAAATCACCAAGCTAGCCATGTTCTGGGATGCTTTCCTGATTCATAA 1053 0.4549 MERPSMEMESCVPPGFRFRPTEEELVGYYLKRKINSLKIDPDVIAQIDLYRIEPWDIQDKCKMGYEEEKEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAVMSKKNRLIGMRKTLVFYKGRAPYGSKTDWIMHEFRLQTSQHSPPQEEGWVVCRAFKKPSPTQHRPSFECWSGQAHFFRDQISNTTRPQSLSFTNETLNPVLYPANEGTSFSNAFTSNHHRQLFLPNDAVLEDHNNNGQLVELIPQLDSPTASLSARAVKQNGFTNEDNYSQERTNNNNNVNDGQGIIDWTSLDNLLSSQFADDTAAADYFSHPNMPLMPQTSRDLQVLQPQNHQASHVLGCFPDS 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1404 350 Gene3D NAC domain 21 165 IPR036093 GO:0003677|GO:0006355
Lele48g1404 350 SUPERFAMILY NAC domain 8 162 IPR036093 GO:0003677|GO:0006355
Lele48g1404 350 FunFam Nac domain-containing protein 86 21 165 - -
Lele48g1404 350 ProSiteProfiles NAC domain profile. 12 162 IPR003441 GO:0003677|GO:0006355
Lele48g1404 350 Pfam No apical meristem (NAM) protein 13 141 IPR003441 GO:0003677|GO:0006355
Lele48g1404 350 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1404 Lele-ChrLele48 17960114 17962264 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g1404 8 350 NAC Transcription Factor Family AT1G71930 48.459 4.09e-103 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele48g1404 NAM 7.2e-36 No_clan