Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1397 ATGGCCAGGTATGTCTGCATATCGTCTGTCCTCTTCGTTGCTCTCTGCTTTTGGTTCTGCCCAATGGTGTTGTCTGAGCTATCCCAGAACCAAACCAACACCATGGCCACACTCTCCCAGCTTCTTTTTGGAAATGGATTAACTGATTCATGGAACATTGACATAAACCCACATCCATGTAAATGGGAGGGAGTTGACTGCGATCGCACTAATTCATCTATAGTCCAATTTCGGCTAGCTGGATATTCCATCTCTTCTTCCGAATTTCTCACTCTTCTTTGCCAAATTGAAAGTTTGCAGCATCTTGATCTTTCTCGTAACATCCTTAGCTCAATTCCAGACAAATTCATCACTGATTGTGGGAAGGTTGAGGGATTAAAGTTGCTCAATTTCAGTAGAAACGACATAAGGGGTCCCTTGCCTACTTTTCGTGGATTTGATGGGTTAGAATCCCTGGATATGTCTTTCAATTACTTTTCAGGGAAAATTGATTCTGAGTTAGCTGGATTAGCTAGCCTCAAGAGCTTAAATCTCAGTACCAATTCTTTCAATGGGTCCCTTCCTACCAAACTGGGAAATTCCGCGGCTTTGGACCAGGTTGTGCTAAGTGGTAATCAATTTGAAGGAACAATCCCTGCTGAAATCCTGAGTTACACAAATTTGACTTTGCTTGATCTCCAACAAAATAAGCTTTCAGGGTCTATTCCTAGCAACATAGGAGATCTATCCAAATTGGAAACTTTGATACTGTCCTCTAATCTCCTTGGAGGGGAAGTCCCAAGTGCACTCTCGAACCTCAAAGCCCTCTTCCGTTTTGCAGCCAATGAAAACAACTTTAATGGCTTTGTTCCCAGCGGAATTACAAGATTTCTCGGTAACTTGGATCTCAGTTATAATAAGTTGTCCGGGCCAATTCCACCAGACTTTTTTTCACACTCAAATCTGGTGTCTGTGGATTTGTCCAATAACTCGTTATCTGGGCCATTACCTGCAGACATTTCTTCTAGCATTATCAGGTTGAGATTAGGGGGGAATTCTCTAAATGGGACGCTACCATCAAAACCATTTGTGACGGCTCTGAAGATGACGTATATCGAACTTGAAGCCAATAACTTGACAGGCCAAATACCTGTTGAGGTGGGTTCTCGCCAGAGTTTGGCCTTGTTGAACTTGGCTCACAATCGTCTATCTGGGGAATTGCCTGCAGAGCTTGGTAAGCTTAGCAATCTTCAAGTATTGCAGCTTCAAGGGAATAAGCTTTCTGGACAAATACCAACTGAAGTGTCTCAGCTTCAGAAGTTGTCAACGCTGAATTTGAGCGACAATTCTCTGAATGGAACCATTCCACGAGCAATGTTCAATTTGGCAAAGCTTAATAAGCTTTACTTACAGCAAAACAATCTCAGTGGTGCTATTCCCACATCTATAAGCGGCATGGATTCTCTTATCGAACTTCAACTTGGAGAAAACCAGCTAAGTGGTTCGATTCCAAAAATGCCATCGAATCTTCAGATTGCCTTGAATCTCAGCAGCAATCTCTTTATAGGGCCTATTCCTAGCACTCTTTCTGGGTTGAATAAACTGGAAATCTTGGATCTTTCAAATAACAAATTTAACGGTAAAATTCCTGATTTTCTTACCAGAATGCCGGCTTTGACACAGTTGGAACTTTCTAAGAATGAGCTGTATGGTGTCATTCCCGACTTTAATTCTCATGTTAAAGTTGATTCGGATGGAAATCATGGTCTCGTAAACAAAACTGCAACTTCCAACACTTCCCCAGGATCTTCAAAAGGAAATCCTGCTGTTGTGGCAGTTCTTGTTGCACTTGCAGCTGCAGTTTTTCTTGTTGGCCTGGTCACTGTGCTGGCCGTATTAATCTCAAGGCGCTTATACAGGGTAAAGGATGAGCACTTGCAACCACCTGAAGACCCTCAACCCCCTAAGGTAATCCAAGGTAACTTATTAACTCCAAATGGAATTCACAGATCCAACATTGATTTCTCTAAGGCCATGAAAGATGTTGCTGAAACATCAAACATTACACTGAAAACAAGGTTTTCAACTTATTACAAGACTATCATGCCTTCTGGATCAATCTACTTTGTCAAGAAGCTTAACTGGAGCGAGAAGCTATTCCCTCTGGGCAGTCGTGATAAATTTGGCAAAGAGATAGAGGTCTTGGCAAAATTGAACAATTCAAATGTCATGACTCCTTTGGCTTATGTTCTGTCCACCGACAGCGCGTATATACTGTATGAATTTATGTCAAATGGCTCCCTTTATGACGCTCTTCACGGAAGCATGGGAAGCACTTTAGATTGGGCTAGCAGATATAGTATAGCTGTTGGGGCGGCTCAAGGTCTCTCTTTTCTGCACGGATTTACCTCAGGTCCAATTCTTCTTCTTGACCTATCAAGTAAAAGTATAATGCTGAAGTCCCTCAAGGAGCCTCTAGTTGGAGATATTGAACTCTACAAGGTGATTGATCCTTCAAAGAGTACTGGAAGTTTTTCTGCAGTTGCTGGTTCTGTTGGCTATATCCCTCCAGAGTATGCATACACAATGAGAGTGACGACGGCGGGGAATGTGTACAGCTTTGGGGTAATCCTGCTTGAGTTGTTAACGGGAAAGCCAGCAGTGAGTGATGGAACTGAATTGGGGAAGTGGGTGATGCGCAACTCGACGAAGCAAGAACACATTCTGGATTTTAATGTCAGTAAAACTTCTCAGGCTGTCAAAACCCAGATGCTTGCAATCCTTCGGATAGCTCTTGCCTGTGTCAGTGCATCCCCTGAAGCAAGACCAAAGATGAAGAGTGTGCTCCGGATGCTCCTGACTGTACGTTAA 2850 0.4284 MARYVCISSVLFVALCFWFCPMVLSELSQNQTNTMATLSQLLFGNGLTDSWNIDINPHPCKWEGVDCDRTNSSIVQFRLAGYSISSSEFLTLLCQIESLQHLDLSRNILSSIPDKFITDCGKVEGLKLLNFSRNDIRGPLPTFRGFDGLESLDMSFNYFSGKIDSELAGLASLKSLNLSTNSFNGSLPTKLGNSAALDQVVLSGNQFEGTIPAEILSYTNLTLLDLQQNKLSGSIPSNIGDLSKLETLILSSNLLGGEVPSALSNLKALFRFAANENNFNGFVPSGITRFLGNLDLSYNKLSGPIPPDFFSHSNLVSVDLSNNSLSGPLPADISSSIIRLRLGGNSLNGTLPSKPFVTALKMTYIELEANNLTGQIPVEVGSRQSLALLNLAHNRLSGELPAELGKLSNLQVLQLQGNKLSGQIPTEVSQLQKLSTLNLSDNSLNGTIPRAMFNLAKLNKLYLQQNNLSGAIPTSISGMDSLIELQLGENQLSGSIPKMPSNLQIALNLSSNLFIGPIPSTLSGLNKLEILDLSNNKFNGKIPDFLTRMPALTQLELSKNELYGVIPDFNSHVKVDSDGNHGLVNKTATSNTSPGSSKGNPAVVAVLVALAAAVFLVGLVTVLAVLISRRLYRVKDEHLQPPEDPQPPKVIQGNLLTPNGIHRSNIDFSKAMKDVAETSNITLKTRFSTYYKTIMPSGSIYFVKKLNWSEKLFPLGSRDKFGKEIEVLAKLNNSNVMTPLAYVLSTDSAYILYEFMSNGSLYDALHGSMGSTLDWASRYSIAVGAAQGLSFLHGFTSGPILLLDLSSKSIMLKSLKEPLVGDIELYKVIDPSKSTGSFSAVAGSVGYIPPEYAYTMRVTTAGNVYSFGVILLELLTGKPAVSDGTELGKWVMRNSTKQEHILDFNVSKTSQAVKTQMLAILRIALACVSASPEARPKMKSVLRMLLTVR 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1397 949 SMART LRR_sd22_2 218 241 - -
Lele48g1397 949 SMART LRR_sd22_2 525 547 - -
Lele48g1397 949 SMART LRR_sd22_2 242 268 - -
Lele48g1397 949 SMART LRR_sd22_2 455 481 - -
Lele48g1397 949 SMART LRR_sd22_2 407 433 - -
Lele48g1397 949 ProSiteProfiles Protein kinase domain profile. 676 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele48g1397 949 SUPERFAMILY Protein kinase-like (PK-like) 687 945 IPR011009 -
Lele48g1397 949 Gene3D Ribonuclease Inhibitor 31 188 IPR032675 -
Lele48g1397 949 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 30 945 - -
Lele48g1397 949 CDD STKc_IRAK 684 945 - -
Lele48g1397 949 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 756 949 - -
Lele48g1397 949 ProSiteProfiles Leucine-rich repeat profile. 98 119 IPR001611 GO:0005515
Lele48g1397 949 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 190 283 - -
Lele48g1397 949 PRINTS Leucine-rich repeat signature 99 112 - -
Lele48g1397 949 PRINTS Leucine-rich repeat signature 525 538 - -
Lele48g1397 949 Pfam Protein tyrosine and serine/threonine kinase 718 945 IPR001245 GO:0004672|GO:0006468
Lele48g1397 949 SUPERFAMILY L domain-like 52 332 - -
Lele48g1397 949 Pfam Leucine rich repeat 408 468 IPR001611 GO:0005515
Lele48g1397 949 Pfam Leucine rich repeat 507 562 IPR001611 GO:0005515
Lele48g1397 949 Pfam Leucine rich repeat 98 158 IPR001611 GO:0005515
Lele48g1397 949 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 29 189 - -
Lele48g1397 949 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 644 755 - -
Lele48g1397 949 SUPERFAMILY RNI-like 260 566 - -
Lele48g1397 949 Gene3D Phosphorylase Kinase; domain 1 662 755 - -
Lele48g1397 949 SMART LRR_typ_2 407 430 IPR003591 -
Lele48g1397 949 SMART LRR_typ_2 170 194 IPR003591 -
Lele48g1397 949 SMART LRR_typ_2 96 119 IPR003591 -
Lele48g1397 949 SMART LRR_typ_2 525 549 IPR003591 -
Lele48g1397 949 SMART LRR_typ_2 431 455 IPR003591 -
Lele48g1397 949 SMART LRR_typ_2 242 266 IPR003591 -
Lele48g1397 949 Gene3D Ribonuclease Inhibitor 290 380 IPR032675 -
Lele48g1397 949 Gene3D Ribonuclease Inhibitor 503 593 IPR032675 -
Lele48g1397 949 Gene3D Ribonuclease Inhibitor 189 289 IPR032675 -
Lele48g1397 949 Gene3D Ribonuclease Inhibitor 381 502 IPR032675 -
Lele48g1397 949 Gene3D Transferase(Phosphotransferase) domain 1 756 949 - -
Lele48g1397 949 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 331 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1397 Lele-ChrLele48 17916117 17919187 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g1397 149 949 Receptor kinase-like Gene Family AT2G41820 38.221 6.59e-152 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lele48g1397 PK_Tyr_Ser-Thr 6e-23 CL0016