Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1395 ATGGATCCGAAGGAAAACCTCTGTGCTAGCACCTGGACAAGGTCCTCTTCGTTGAACTCTTTGGGGAATGGACTGCATGTTAATTTGTCATCAGGGACTCCCTCATTTCCGAATCTCGGTTTGCAGCATAATCAACCATGGGATGTTCCTTCTATTCCAGATTATGGCCTTGATACTGAAGCTCCTTTCAAAGAATTCAACCAACTATCCCAAACCCAACCTTTCCTTTCCAGTGACTCTAACAATGAGATTAAGATCCCTGCTCAAGAAAATTGTCAGATGAGTGACACATCACAGGCTGATAAACTCCCCAATTGGGACCCCAGTGTAATGTTGAATAATTTGTCTTTTCTGGAAGAAAAGATTCATCAGCTCCAGGATCTTGTGCCCCTGATTGTTGGTCGGAAAGGCCAAGCTTATGTTCAACCTGATGAAGTTGTTGTGCAGGAACAACAGCTCATTACAGCTGATCTTACATCAATTATTGTTCAGTTGATTTCTACTGCAGGTAGTCTTCTCCCTTCTGTCAGGCATACCCTTAAAAATACAAGTCTGTCGGTTGGACAGCTTGGCCAGCTTCAAGAGAATGCTATTCCTTCTGGATCTTGGGGTCCGAGTACTAGTGCTCATCCTCAAAATAATAGTGCAAATAAAAAGGCTGATGAGTCTACTCAGATTGATCTGCCCAAGGGTTGTGAGATGGAGCAAAACTGCAATGTGGAAGAGCATGAATCAAAAGATGAAGACATGGAGGAGGGTGAGAACCTTCCACCTGGATCCTATGAGATTTTACAGTTAGAAAAAGAAGAAATCCTGGCACCTCATACACACTTCTGTACAATTTGTGGGAAGGGATTCAAGCGAGATGCAAATCTTCGGATGCACATGAGAGGTCACGGTGACGAGTACAAAACACCAGCGGCACTCGCTAAACCTAACAAAGAATCTGGGCCCGAACCAAAGCTTATAAAGAGGTATTCCTGCCCCTATGCAGGTTGCAAGCGTAACAAGGATCACAAGAAGTTTCAACCTTTGAAGACGACCTTATGTGTCAAAAACCATTACAAAAGAACACACTGCGACAAAAGTTACATTTGCAGTAGGTGCCACACAAAGAAGTTTTCAGTCATGGCTGATCTAAAAACACATGAAAAACACTGTGGAAAGGACAAATGGCTCTGTTCATGTGGCACAACATTTTCGAGGAAAGACAAGCTTTTTGGGCACATTGCTCTATTCCAAGGTCATACACCAGCTATTCCCTTAGATGATGCAAAAACACCAGCTGTGCCTCCTGATCTTGAAAGCAAAGAAAACGGTAGTATGGGAGAAGGAGTAAACTTGAGTTTTGCATCAAATCCTTCGGGGGGGAATGGAGCTTTGGATTTGAAAGGTGATATTGATGATCCTATCAATTATTTATCTTCGTTGAACTTTGATACCTGTAACTTTGGTGGCTTTAATGAATTCCCCCGACCTCCATTTGAAGACTCAGAAGGTTCATTCTCCTTCATGATGCCTGGATCATTCAGTTACACTCACAAGACTGGAGTCGAAGCGGATTCTGATGATCTTTAG 1578 0.4297 MDPKENLCASTWTRSSSLNSLGNGLHVNLSSGTPSFPNLGLQHNQPWDVPSIPDYGLDTEAPFKEFNQLSQTQPFLSSDSNNEIKIPAQENCQMSDTSQADKLPNWDPSVMLNNLSFLEEKIHQLQDLVPLIVGRKGQAYVQPDEVVVQEQQLITADLTSIIVQLISTAGSLLPSVRHTLKNTSLSVGQLGQLQENAIPSGSWGPSTSAHPQNNSANKKADESTQIDLPKGCEMEQNCNVEEHESKDEDMEEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPNKESGPEPKLIKRYSCPYAGCKRNKDHKKFQPLKTTLCVKNHYKRTHCDKSYICSRCHTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDDAKTPAVPPDLESKENGSMGEGVNLSFASNPSGGNGALDLKGDIDDPINYLSSLNFDTCNFGGFNEFPRPPFEDSEGSFSFMMPGSFSYTHKTGVEADSDDL 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1395 525 Gene3D Classic Zinc Finger 261 329 - -
Lele48g1395 525 ProSiteProfiles Zinc finger C2H2 type domain profile. 277 304 IPR013087 -
Lele48g1395 525 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 89 496 IPR044300 GO:0010044|GO:0010447
Lele48g1395 525 ProSitePatterns Zinc finger C2H2 type domain signature. 279 299 IPR013087 -
Lele48g1395 525 SUPERFAMILY beta-beta-alpha zinc fingers 275 302 IPR036236 -
Lele48g1395 525 SMART c2h2final6 364 386 IPR013087 -
Lele48g1395 525 SMART c2h2final6 277 299 IPR013087 -
Lele48g1395 525 SMART c2h2final6 326 359 IPR013087 -
Lele48g1395 525 MobiDBLite consensus disorder prediction 196 222 - -
Lele48g1395 525 MobiDBLite consensus disorder prediction 196 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1395 Lele-ChrLele48 17907918 17909495 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g1395 246 523 C2H2 Transcription Factor Family AT1G34370 70.486 2.75e-138 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele48g1395 None None None