Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1360 ATGGGGGATACGGAGACTGGGACGCCGACGTCAGCGTCGGCACCAGCTACGCCGGGGACTCCGGCACCGCTATTCTCGTCGCTGCATGTGGACTCACTGTCATACGAGCGGAACTCAATGCCGAGGTGCAAGTGTTTGCCAACGAAGAGCCACACCTGCTTCACTGACTTCTCTGTCCCCGACGTGTCTCTCACGCGCAAGATCGGAGCAGAGTTCGTGGGCACCTTCTTACTCATGTTCGCCGCATCGGCGGGACCAATTCTGAACCAGAAATACAACGGATCAGAGAGCCTGATTGGCAACGCATCCTGTGCTGGCTTAGGTGTCATGATCGTAATCTTGTCCACCGGCCACATTTCCGGCGCTCACCTCAACCCTTCCCTCACCATCGCCTTCGCCACCTTCCGCCACTTCCCCTGGATCCACGTCCCCGCCTACATCGCCGCTCAGGTCGTCGCCTCCATCTGCGCCTCCTTCGCCCTCAAGGGCATCTTCCATCCTTACATGTCCGGCGGCGTTACCATTCCTTCCGTGAGTACCACCGTTGGCCAGGCTTTTGCGCTTGAGTTCATCATCACTTTCAATCTCCTCTTCGTTGTCACTGCCGTTGCCACTGATACTCGTGCTGTTGGGGAATTGGCTGGGATTGCTGTTGGAGCCACAGTTTTGCTCAACATTCTCATATCTGGGCCGGCAAGTGGCGGTTCAATGAACCCGGTTCGCACCTTGGGTCCGGCCGTGGCTGCAGGGAACTACAAGCACCTATGGATATATCTGGTCGCGCCCACCCTCGGAGCTCTGGCCGGTTCCGGTGTTTATACTCTCGTCAAGCTCCGTGACAACGAGGCCGAACCACCACGCCAGGTTCGGAGCTTCCGTCGCTAG 885 0.5819 MGDTETGTPTSASAPATPGTPAPLFSSLHVDSLSYERNSMPRCKCLPTKSHTCFTDFSVPDVSLTRKIGAEFVGTFLLMFAASAGPILNQKYNGSESLIGNASCAGLGVMIVILSTGHISGAHLNPSLTIAFATFRHFPWIHVPAYIAAQVVASICASFALKGIFHPYMSGGVTIPSVSTTVGQAFALEFIITFNLLFVVTAVATDTRAVGELAGIAVGATVLLNILISGPASGGSMNPVRTLGPAVAAGNYKHLWIYLVAPTLGALAGSGVYTLVKLRDNEAEPPRQVRSFRR 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1360 294 SUPERFAMILY Aquaporin-like 62 285 IPR023271 -
Lele48g1360 294 Pfam Major intrinsic protein 62 273 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele48g1360 294 MobiDBLite consensus disorder prediction 1 17 - -
Lele48g1360 294 PRINTS Major intrinsic protein family signature 105 129 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele48g1360 294 PRINTS Major intrinsic protein family signature 142 161 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele48g1360 294 PRINTS Major intrinsic protein family signature 256 276 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele48g1360 294 PRINTS Major intrinsic protein family signature 219 241 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele48g1360 294 PRINTS Major intrinsic protein family signature 66 85 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele48g1360 294 PRINTS Major intrinsic protein family signature 188 206 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele48g1360 294 CDD MIP 66 276 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele48g1360 294 Gene3D Glycerol uptake facilitator protein. 44 289 IPR023271 -
Lele48g1360 294 PANTHER AQUAPORIN NIP2-1 40 282 IPR034294 -
Lele48g1360 294 FunFam Aquaporin NIP2-1 54 288 - -
Lele48g1360 294 ProSitePatterns MIP family signature. 123 131 IPR022357 -
Lele48g1360 294 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1360 Lele-ChrLele48 17675541 17678192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g1360 24 294 Major Intrinsic Protein MIP AT4G10380 76.259 1.16e-154 432