Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1333 ATGTCCTTCCGCAGTATAGTTCGTGATGTAAGGGATAGTTTTGGAAGCTTATCAAGGCGGAGTTTTGAGGTAAGGCTTCATGGCCATCACAGGGGCAAGTCACATAGTTCAGTCCATGAGGCGTCAGAACAACCTCCAGTGATACAGAACAGCCGGTGGGCTAGCCTTCCACCTGAGCTCCTCCATGATGTTATCAAAAGATTGGAAGAAAGTGAGAGCACATGGCCAGCCCGTAAGCATGTGGTTGCATGTGCTGCAGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTGTGTAATCTAGAGTTCTGTGGGAAAATTACTTTTCCTGTCTCCTTGAAGCAGCCTGGGACTCGGGATGAAATGATGCAGTGTTTCATCAAGAGAGACAAATCTAACCTGACATACCACCTCTTTCTTTGCCTAAGTCCTGCCTTGCTTGTTGAGAATGGAAAGTTTCTTCTCTCTGCCAAACGGACTAGACGAACAACTTGCACAGAGTACATTATATCCATGGATGCTGATAGCATATCAAGATCTAGTAGCACTTATATTGGGAAACTAAGGTCAAATTTTCTGGGCACCAAATTCCTAATATATGATACACAGCCTCCCTATAATTATGCTCAGTTGCCTCCTGCTCCACCTAGCCAAAGCCATCGATTCTATTCTAAGAAGGTGTCTCCGAAAGTCCCTAGTGGCAGCTACAATATTGCTCAGGTCACCTACGAGTTGAACGTGCTTGGTACAAGAGGCCCACGAAGGATGAACTGCACCATGAGCTCAATCCCAGAATCAGCCCTTGATCCTGGAGGCGCTGTCCCTGGCCATCCAGAGCTCCTTCCCCGTGCCCTGGAGGACTCATTCCGGAGTACAACATCCTTTTCAAAATCAATCCACGGTTCGTCCAATTTTAGCAGTTCCCGGTTCTCAGACATCATGTGGACCGGCAACGGAGAAGAGAGTGGGGAGGTAAAAGAGAGGCCACTGATTCTCAAGAACAAGGCTCCAAGATGGCATGAGCAGCTGCAATGCTGGTGCCTCAACTTCCGGGGCAGAGTGACAGTGGCCTCAATCAAGAATTTTCAGCTGATTGCTGCAGTGCAGCCTGCAGCCAGTGCTCCAACGCCGGGGCAGCCTGCCCCGGCAGATCACAACAAGATTATTCTTCAGTTTGGCAAGGTGGGCAAGGATACGTTCACCATGGACTATCGATATCCTCTGTCGGCATTCCAGGCGTTCGCAATATGCTTGACTAGCTTTGACACTAAACTAGCATGTGAATAG 1290 0.4845 MSFRSIVRDVRDSFGSLSRRSFEVRLHGHHRGKSHSSVHEASEQPPVIQNSRWASLPPELLHDVIKRLEESESTWPARKHVVACAAVCKSWREMCKEIVCNLEFCGKITFPVSLKQPGTRDEMMQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDADSISRSSSTYIGKLRSNFLGTKFLIYDTQPPYNYAQLPPAPPSQSHRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMNCTMSSIPESALDPGGAVPGHPELLPRALEDSFRSTTSFSKSIHGSSNFSSSRFSDIMWTGNGEESGEVKERPLILKNKAPRWHEQLQCWCLNFRGRVTVASIKNFQLIAAVQPAASAPTPGQPAPADHNKIILQFGKVGKDTFTMDYRYPLSAFQAFAICLTSFDTKLACE 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1333 429 Pfam Tub family 114 424 IPR000007 -
Lele48g1333 429 FunFam Tubby-like F-box protein 48 101 - -
Lele48g1333 429 Gene3D Tubby Protein; Chain A 112 423 IPR025659 -
Lele48g1333 429 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Lele48g1333 429 PRINTS Tubby superfamily signature 333 350 IPR000007 -
Lele48g1333 429 PRINTS Tubby superfamily signature 386 405 IPR000007 -
Lele48g1333 429 PRINTS Tubby superfamily signature 351 367 IPR000007 -
Lele48g1333 429 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Lele48g1333 429 PRINTS Tubby superfamily signature 407 429 IPR000007 -
Lele48g1333 429 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Lele48g1333 429 SUPERFAMILY Tubby C-terminal domain-like 103 429 IPR025659 -
Lele48g1333 429 ProSitePatterns Tub family signature 2. 414 429 IPR018066 -
Lele48g1333 429 Gene3D - 48 99 - -
Lele48g1333 429 Pfam F-box domain 53 101 IPR001810 GO:0005515
Lele48g1333 429 SUPERFAMILY F-box domain 42 96 IPR036047 GO:0005515
Lele48g1333 429 FunFam Tubby-like F-box protein 110 429 - -
Lele48g1333 429 PANTHER TUBBY-RELATED 38 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1333 Lele-ChrLele48 17510207 17513099 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g1333 1 429 TUB Transcription Factor Family AT1G76900 67.609 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele48g1333 Tub 4.3e-113 CL0395